Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J6X_0831/2S/2110:2114No text annotation
homologous
HL_8C3A_045
NA

Problematic loops

#loop idProblemSequence
HL_3J6X_001No text annotation
HL_3J6X_002No text annotation
HL_3J6X_003GNRA related
HL_3J6X_004No text annotation
HL_3J6X_005No text annotation
HL_3J6X_006T-loop with 1 bulged base
HL_3J6X_007Mini UNCG
HL_3J6X_008GNRA related
HL_3J6X_009No text annotation
HL_3J6X_010No text annotation
HL_3J6X_011UNCG
HL_3J6X_012No text annotation
HL_3J6X_116No text annotation
HL_3J6X_013No text annotation
HL_3J6X_121No text annotation
HL_3J6X_014No text annotation
HL_3J6X_015GNRA variation
HL_3J6X_016No text annotation
HL_3J6X_017No text annotation
HL_3J6X_018No text annotation
HL_3J6X_019Pseudoknot geometry
HL_3J6X_020No text annotation
HL_3J6X_021GNRA
HL_3J6X_022No text annotation
HL_3J6X_023No text annotation
HL_3J6X_024GNRA
HL_3J6X_025GNRA
HL_3J6X_026No text annotation
HL_3J6X_027Anticodon loop related
HL_3J6X_028GNRA
HL_3J6X_029No text annotation
HL_3J6X_030No text annotation
HL_3J6X_031GNRA
HL_3J6X_032GNRA
HL_3J6X_033No text annotation
HL_3J6X_034No text annotation
HL_3J6X_035No text annotation
HL_3J6X_036GNRA variation
HL_3J6X_037No text annotation
HL_3J6X_038No text annotation
HL_3J6X_039No text annotation
HL_3J6X_040No text annotation
HL_3J6X_041T-loop with 2 stacked bulged bases
HL_3J6X_042No text annotation
HL_3J6X_043T-loop with unstacked turn
HL_3J6X_044No text annotation
HL_3J6X_045Pseudoknot geometry
HL_3J6X_046GNRA
HL_3J6X_047GNRA
HL_3J6X_048No text annotation
HL_3J6X_117No text annotation
HL_3J6X_049No text annotation
HL_3J6X_050GNRA
HL_3J6X_051T-loop with 2 stacked bulged bases
HL_3J6X_052No text annotation
HL_3J6X_053GNRA
HL_3J6X_054GNRA
HL_3J6X_055No text annotation
HL_3J6X_056GNRA
HL_3J6X_057No text annotation
HL_3J6X_058No text annotation
HL_3J6X_059Externally structured
HL_3J6X_060GNRA
HL_3J6X_061No text annotation
HL_3J6X_062GNRA
HL_3J6X_063No text annotation
HL_3J6X_064No text annotation
HL_3J6X_065GNRA wlth tandem sheared
HL_3J6X_066No text annotation
HL_3J6X_067GNRA
HL_3J6X_068T-loop with 2 stacked bulged bases
HL_3J6X_069Pseudoknot geometry with 3' bulge
HL_3J6X_070GNRA variation
HL_3J6X_071No text annotation
HL_3J6X_072No text annotation
HL_3J6X_073GNRA
HL_3J6X_074No text annotation
HL_3J6X_075No text annotation
HL_3J6X_076No text annotation
HL_3J6X_077No text annotation
HL_3J6X_078No text annotation
HL_3J6X_079GNRA
HL_3J6X_080UNCG variation
HL_3J6X_081No text annotation
HL_3J6X_082No text annotation
HL_3J6X_084No text annotation
HL_3J6X_085GNRA
HL_3J6X_086GNRA
HL_3J6X_087No text annotation
HL_3J6X_088No text annotation
HL_3J6X_118No text annotation
HL_3J6X_089No text annotation
HL_3J6X_119No text annotation
HL_3J6X_090No text annotation
HL_3J6X_091No text annotation
HL_3J6X_092No text annotation
HL_3J6X_093No text annotation
HL_3J6X_094No text annotation
HL_3J6X_095No text annotation
HL_3J6X_096Pseudoknot geometry
HL_3J6X_097No text annotation
HL_3J6X_098GNRA
HL_3J6X_099Pseudoknot geometry
HL_3J6X_100No text annotation
HL_3J6X_101No text annotation
HL_3J6X_102No text annotation
HL_3J6X_103GNRA
HL_3J6X_104GNRA
HL_3J6X_105Ribsomal LSU H95
HL_3J6X_106No text annotation
HL_3J6X_107No text annotation
HL_3J6X_108No text annotation
HL_3J6X_109No text annotation
HL_3J6X_110Mini UNCG
HL_3J6X_111No text annotation
HL_3J6X_112GNRA
HL_3J6X_120Pseudoknot with intercalation
HL_3J6X_113No text annotation
HL_3J6X_114No text annotation
HL_3J6X_115No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J6X_0761/1S/1636:1638,
1/1S/1764:1767
No text annotation
geometric
IL_5J7L_058
NA

Problematic loops

#loop idProblemSequence
IL_3J6X_001Single bulged C
IL_3J6X_002Isolated non-canonical cWW pair
IL_3J6X_003Triple sheared related
IL_3J6X_004No text annotation
IL_3J6X_005Minor groove platform
IL_3J6X_006No text annotation
IL_3J6X_007No text annotation
IL_3J6X_008Tandem non-canonical cWW pairs
IL_3J6X_009Multiple bulged bases
IL_3J6X_010No text annotation
IL_3J6X_011tWH-tWH-tHW-tHW
IL_3J6X_227tWH-tWH-tHW-tHW
IL_3J6X_012Isolated non-canonical cWW pair
IL_3J6X_013Double sheared
IL_3J6X_014Major groove platform with extra cWW
IL_3J6X_015Isolated non-canonical cWW pair
IL_3J6X_016Single bulged A
IL_3J6X_017No text annotation
IL_3J6X_018Isolated non-canonical cWW pair
IL_3J6X_228Single bulged U
IL_3J6X_019Kink-turn with non-sequential stacking
IL_3J6X_020No text annotation
IL_3J6X_229No text annotation
IL_3J6X_021No text annotation
IL_3J6X_022Isolated cWH basepair
IL_3J6X_023Isolated near basepair
IL_3J6X_024Single bulged U
IL_3J6X_025C-loop
IL_3J6X_026Single bulged G
IL_3J6X_027No text annotation
IL_3J6X_230No text annotation
IL_3J6X_028Minor groove platform
IL_3J6X_029Minor groove platform
IL_3J6X_030SSU/LSU pseudoknot
IL_3J6X_031Single bulged U
IL_3J6X_032Kink-turn related
IL_3J6X_231No text annotation
IL_3J6X_033Isolated non-canonical cWW pair
IL_3J6X_034tSH-tHW-tHS
IL_3J6X_035Isolated non-canonical cWW pair
IL_3J6X_036No text annotation
IL_3J6X_037Major groove minor groove platform; mini C-loop
IL_3J6X_038Isolated non-canonical cWW pair
IL_3J6X_039No text annotation
IL_3J6X_040No text annotation
IL_3J6X_041Major groove platform; stack outside cWW
IL_3J6X_042Single bulged U
IL_3J6X_232Isolated non-canonical cWW pair
IL_3J6X_043Tandem non-canonical cWW pairs
IL_3J6X_044Tandem non-canonical cWW pairs
IL_3J6X_045Tandem non-canonical cWW pairs
IL_3J6X_233Isolated non-canonical cWW pair
IL_3J6X_046Kink-turn related
IL_3J6X_047Other IL
IL_3J6X_048tSH-tHW-tHS
IL_3J6X_049No text annotation
IL_3J6X_050Tandem non-canonical cWW pairs
IL_3J6X_051Single bulged U
IL_3J6X_0528x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3J6X_053Single bulged A
IL_3J6X_054Single bulged G
IL_3J6X_055C-loop
IL_3J6X_056Isolated non-canonical cWW pair
IL_3J6X_057Minor groove platform
IL_3J6X_058Isolated non-canonical cWW pair
IL_3J6X_059No text annotation
IL_3J6X_234No text annotation
IL_3J6X_235No text annotation
IL_3J6X_258No text annotation
IL_3J6X_259No text annotation
IL_3J6X_060No text annotation
IL_3J6X_061No text annotation
IL_3J6X_062Single bulged U
IL_3J6X_063Isolated cWS basepair
IL_3J6X_236No text annotation
IL_3J6X_064Minor groove platform with extra cWW
IL_3J6X_065Single bulged A
IL_3J6X_066Isolated cWH basepair
IL_3J6X_067Single bulged A
IL_3J6X_068Isolated non-canonical cWW pair
IL_3J6X_237No text annotation
IL_3J6X_069No text annotation
IL_3J6X_238No text annotation
IL_3J6X_070No text annotation
IL_3J6X_071Major groove platform; stack outside cWW
IL_3J6X_239No text annotation
IL_3J6X_072No text annotation
IL_3J6X_073180 degree turn
IL_3J6X_074Tandem non-canonical cWW pairs
IL_3J6X_075No text annotation
IL_3J6X_077No text annotation
IL_3J6X_078Isolated non-canonical cWW pair
IL_3J6X_079No text annotation
IL_3J6X_080Isolated non-canonical cWW pair
IL_3J6X_240Double sheared
IL_3J6X_081No text annotation
IL_3J6X_241No text annotation
IL_3J6X_082Isolated non-canonical cWW pair
IL_3J6X_083Double sheared
IL_3J6X_084Isolated non-canonical cWW pair
IL_3J6X_085Tandem non-canonical cWW pairs
IL_3J6X_086Triple sheared
IL_3J6X_087No text annotation
IL_3J6X_242Partly complementary
IL_3J6X_260Tandem non-canonical cWW pairs
IL_3J6X_088Single bulged C
IL_3J6X_089Tandem non-canonical cWW pairs
IL_3J6X_090No text annotation
IL_3J6X_091tSH-tHW-tHH-tHS
IL_3J6X_092No text annotation
IL_3J6X_243No text annotation
IL_3J6X_093No text annotation
IL_3J6X_094Isolated non-canonical cWW pair
IL_3J6X_095Single stack bend
IL_3J6X_261No text annotation
IL_3J6X_096No text annotation
IL_3J6X_262No text annotation
IL_3J6X_097Major groove platform with extra pair
IL_3J6X_098Single bulged U
IL_3J6X_099Single bulged A
IL_3J6X_100No text annotation
IL_3J6X_101Triple sheared with non-canonical cWW
IL_3J6X_102Isolated non-canonical cWW pair
IL_3J6X_103No text annotation
IL_3J6X_104Single bulged A
IL_3J6X_105No text annotation
IL_3J6X_106No text annotation
IL_3J6X_107Isolated non-canonical cWW pair
IL_3J6X_108No text annotation
IL_3J6X_109No text annotation
IL_3J6X_110Single bulged A
IL_3J6X_244Single bulged U
IL_3J6X_111Isolated non-canonical cWW pair
IL_3J6X_112No text annotation
IL_3J6X_113Isolated non-canonical cWW pair
IL_3J6X_114No text annotation
IL_3J6X_115Quadruple sheared
IL_3J6X_116Major groove platform with extra cWW
IL_3J6X_117Single bulged U
IL_3J6X_245No text annotation
IL_3J6X_118No text annotation
IL_3J6X_119Isolated non-canonical cWW pair
IL_3J6X_120No text annotation
IL_3J6X_121180 degree turn
IL_3J6X_122Single bulged G
IL_3J6X_1237x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3J6X_124Minor groove platform
IL_3J6X_125C-loop
IL_3J6X_126Tandem non-canonical cWW pairs
IL_3J6X_127Isolated non-canonical cWW pair
IL_3J6X_128Decoding loop related
IL_3J6X_246Isolated non-canonical cWW pair
IL_3J6X_129Tandem non-canonical cWW pairs
IL_3J6X_130Single bulged G
IL_3J6X_131Isolated non-canonical cWW pair
IL_3J6X_132UAA/GAN
IL_3J6X_133SSU/LSU pseudoknot
IL_3J6X_134Single bulged U
IL_3J6X_135No text annotation
IL_3J6X_136No text annotation
IL_3J6X_137Single bulged U
IL_3J6X_138No text annotation
IL_3J6X_247Kink-turn
IL_3J6X_139No text annotation
IL_3J6X_140Major groove platform with extra cWW
IL_3J6X_141Isolated cWS basepair
IL_3J6X_248No text annotation
IL_3J6X_142Single bulged A
IL_3J6X_143Kink-turn
IL_3J6X_144Single bulged A
IL_3J6X_145No text annotation
IL_3J6X_249C-loop
IL_3J6X_146UAA/GAN
IL_3J6X_147No text annotation
IL_3J6X_148No text annotation
IL_3J6X_149No text annotation
IL_3J6X_150No text annotation
IL_3J6X_151Isolated non-canonical cWW pair
IL_3J6X_152Single bulged C
IL_3J6X_153Single stack bend
IL_3J6X_154No text annotation
IL_3J6X_155No text annotation
IL_3J6X_156Kink-turn
IL_3J6X_157No text annotation
IL_3J6X_158No text annotation
IL_3J6X_159Major groove platform; stack outside cWW
IL_3J6X_250No text annotation
IL_3J6X_160No text annotation
IL_3J6X_161No text annotation
IL_3J6X_162Isolated non-canonical cWW pair
IL_3J6X_163No text annotation
IL_3J6X_164Major groove platform with extra cWW
IL_3J6X_165Single bulged A
IL_3J6X_251No text annotation
IL_3J6X_166Kink-turn related
IL_3J6X_167Major groove intercalation
IL_3J6X_168Multiple bulged bases
IL_3J6X_169Single bulged U
IL_3J6X_170Major groove platform with extra pair
IL_3J6X_171No text annotation
IL_3J6X_252No text annotation
IL_3J6X_172Bulged stacked bases
IL_3J6X_173No text annotation
IL_3J6X_174No text annotation
IL_3J6X_175No text annotation
IL_3J6X_176Single bulged U
IL_3J6X_177Minor groove platform
IL_3J6X_178Isolated tHS basepair with bulges
IL_3J6X_253No text annotation
IL_3J6X_179No text annotation
IL_3J6X_180Single bulged U
IL_3J6X_181No text annotation
IL_3J6X_182Single bulged A
IL_3J6X_183No text annotation
IL_3J6X_184Tandem non-canonical cWW pairs
IL_3J6X_185Single stack bend
IL_3J6X_186No text annotation
IL_3J6X_187Major groove minor groove platform with extra cWW
IL_3J6X_188No text annotation
IL_3J6X_189Major groove platform
IL_3J6X_190No text annotation
IL_3J6X_191Multiple bulged bases
IL_3J6X_254No text annotation
IL_3J6X_192No text annotation
IL_3J6X_193Isolated non-canonical cWW pair
IL_3J6X_194Single bulged A
IL_3J6X_195Double sheared
IL_3J6X_196Isolated non-canonical cWW pair
IL_3J6X_1978x7 Sarcin-Ricin; G-bulge
IL_3J6X_198Major groove minor groove platform with tHH
IL_3J6X_199UAA/GAN related
IL_3J6X_200Multiple bulged bases
IL_3J6X_201UAA/GAN
IL_3J6X_202Tandem non-canonical cWW pairs
IL_3J6X_263Isolated non-canonical cWW pair
IL_3J6X_203Isolated non-canonical cWW pair
IL_3J6X_204Single bulged A
IL_3J6X_205No text annotation
IL_3J6X_206Single bulged U
IL_3J6X_255No text annotation
IL_3J6X_207No text annotation
IL_3J6X_208Isolated non-canonical cWW pair
IL_3J6X_209Tandem non-canonical cWW pairs
IL_3J6X_256Tandem non-canonical cWW pairs
IL_3J6X_210Single bulged U
IL_3J6X_211Single bulged U
IL_3J6X_212No text annotation
IL_3J6X_213No text annotation
IL_3J6X_214Single bulged U
IL_3J6X_215Double sheared; A in syn
IL_3J6X_216Multiple bulged bases
IL_3J6X_217Single bulged A
IL_3J6X_218Minor groove platform related
IL_3J6X_219Minor groove platform
IL_3J6X_220Single stack bend
IL_3J6X_221Symmetric double minor groove platform
IL_3J6X_2228x7 Sarcin-Ricin; G-bulge
IL_3J6X_223Isolated non-canonical cWW pair
IL_3J6X_224No text annotation
IL_3J6X_257Isolated non-canonical cWW with bulges
IL_3J6X_225No text annotation
IL_3J6X_226Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J6X_0261/2S/2529:2532,
1/2S/2547:2563,
1/2S/2578:2581
No text annotation
homologous
J3_8C3A_009
NA
J5_3J6X_0111/2S/2399:2406,
1/2S/2815:2823,
1/2S/2867:2875,
1/2S/2952:2957,
1/2S/2975:2980
No text annotation

Problematic loops

#loop idProblemSequence
J3_3J6X_001No text annotation
J3_3J6X_031No text annotation
J3_3J6X_002No text annotation
J3_3J6X_032No text annotation
J3_3J6X_003No text annotation
J3_3J6X_004No text annotation
J3_3J6X_005No text annotation
J3_3J6X_006No text annotation
J3_3J6X_007No text annotation
J3_3J6X_008No text annotation
J3_3J6X_009No text annotation
J3_3J6X_010No text annotation
J3_3J6X_033No text annotation
J3_3J6X_011No text annotation
J3_3J6X_012No text annotation
J3_3J6X_034No text annotation
J3_3J6X_013No text annotation
J3_3J6X_014No text annotation
J3_3J6X_035No text annotation
J3_3J6X_036No text annotation
J3_3J6X_015No text annotation
J3_3J6X_037No text annotation
J3_3J6X_016No text annotation
J3_3J6X_017No text annotation
J3_3J6X_018No text annotation
J3_3J6X_019No text annotation
J3_3J6X_020No text annotation
J3_3J6X_021No text annotation
J3_3J6X_045No text annotation
J3_3J6X_022No text annotation
J3_3J6X_023No text annotation
J3_3J6X_038No text annotation
J3_3J6X_024No text annotation
J3_3J6X_039No text annotation
J3_3J6X_025No text annotation
J3_3J6X_040No text annotation
J3_3J6X_027No text annotation
J3_3J6X_028No text annotation
J3_3J6X_041No text annotation
J3_3J6X_042No text annotation
J3_3J6X_029No text annotation
J3_3J6X_043No text annotation
J3_3J6X_030No text annotation
J3_3J6X_044No text annotation
J4_3J6X_001No text annotation
J4_3J6X_002No text annotation
J4_3J6X_003No text annotation
J4_3J6X_004No text annotation
J4_3J6X_005No text annotation
J4_3J6X_006No text annotation
J4_3J6X_007No text annotation
J4_3J6X_013No text annotation
J4_3J6X_008No text annotation
J4_3J6X_009No text annotation
J4_3J6X_010No text annotation
J4_3J6X_011No text annotation
J4_3J6X_012No text annotation
J5_3J6X_001No text annotation
J5_3J6X_002No text annotation
J5_3J6X_003No text annotation
J5_3J6X_004No text annotation
J5_3J6X_005No text annotation
J5_3J6X_006No text annotation
J5_3J6X_007No text annotation
J5_3J6X_008No text annotation
J5_3J6X_009No text annotation
J5_3J6X_010No text annotation
J5_3J6X_012No text annotation
J6_3J6X_002No text annotation
J6_3J6X_001No text annotation
J7_3J6X_001No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.114 s