HL_3J6X_004

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

3J6X|1|1S|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_004 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5697

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

3J6X|1|1S|C|190
3J6X|1|1S|C|191
3J6X|1|1S|U|192
3J6X|1|1S|U|193
3J6X|1|1S|U|194
3J6X|1|1S|G|195

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8