HL_3J6X_011

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

3J6X|1|1S|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2542

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3J6X|1|1S|C|414
3J6X|1|1S|C|415
3J6X|1|1S|A|416
3J6X|1|1S|A|417
3J6X|1|1S|G|418
3J6X|1|1S|G|419

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain 63

60S ribosomal protein L23

Chain S6

40S ribosomal protein S6