HL_3J6X_035

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUAGAGAAGGGGGCAACUCCAUCUCAGA

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|1S|U|1687
3J6X|1|1S|U|1688
3J6X|1|1S|A|1689
3J6X|1|1S|G|1690
3J6X|1|1S|A|1691
3J6X|1|1S|G|1692
3J6X|1|1S|A|1693
3J6X|1|1S|A|1694
3J6X|1|1S|G|1695
3J6X|1|1S|G|1696
3J6X|1|1S|G|1697
3J6X|1|1S|G|1698
3J6X|1|1S|G|1699
3J6X|1|1S|C|1700
3J6X|1|1S|A|1701
3J6X|1|1S|A|1702
3J6X|1|1S|C|1703
3J6X|1|1S|U|1704
3J6X|1|1S|C|1705
3J6X|1|1S|C|1706
3J6X|1|1S|A|1707
3J6X|1|1S|U|1708
3J6X|1|1S|C|1709
3J6X|1|1S|U|1710
3J6X|1|1S|C|1711
3J6X|1|1S|A|1712
3J6X|1|1S|G|1713
3J6X|1|1S|A|1714

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6