HL_3J6X_048

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGCUCGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_048 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2887

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3J6X|1|2S|U|451
3J6X|1|2S|G|452
3J6X|1|2S|C|453
3J6X|1|2S|U|482
3J6X|1|2S|C|483
3J6X|1|2S|G|484
3J6X|1|2S|C|485
3J6X|1|2S|A|486

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains