HL_3J6X_089
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 3J6X|1|2S|A|2372, 3J6X|1|2S|A|2373, 3J6X|1|2S|C|2374
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_089 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.2856
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J6X|1|2S|G|2369
3J6X|1|2S|G|2370
3J6X|1|2S|G|2371
3J6X|1|2S|A|2372
3J6X|1|2S|A|2373
3J6X|1|2S|C|2374
3J6X|1|2S|G|2375
3J6X|1|2S|G|2376
3J6X|1|2S|G|2377
3J6X|1|2S|C|2378
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain 72
- 60S ribosomal protein L32
- Chain 73
- 60S ribosomal protein L33
- Chain L3
- 60S ribosomal protein L3
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