HL_3J6X_106

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

3J6X|1|2S|G|3116, 3J6X|1|2S|C|3120

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6X_106 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.223

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3J6X|1|2S|C|3110
3J6X|1|2S|U|3111
3J6X|1|2S|G|3112
3J6X|1|2S|A|3113
3J6X|1|2S|A|3114
3J6X|1|2S|C|3115
3J6X|1|2S|G|3116
3J6X|1|2S|C|3117
3J6X|1|2S|C|3118
3J6X|1|2S|U|3119
3J6X|1|2S|C|3120
3J6X|1|2S|U|3121
3J6X|1|2S|A|3122
3J6X|1|2S|A|3123
3J6X|1|2S|G|3124

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 56

60S ribosomal protein L16

Chain 80

60S ribosomal protein L40

Chain L9

60S ribosomal protein L9