Loop HL_3J6X

3D structure

PDB id: 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
Description: S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.1 Å

Loop

Sequence: GAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUU
Length: 52 nucleotides
Bulged bases: 3J6X|1|2S|U|2460, 3J6X|1|2S|U|2472, 3J6X|1|2S|C|2473, 3J6X|1|2S|U|2498
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J6X|1|2S|G|2448
3J6X|1|2S|A|2449
3J6X|1|2S|G|2450
3J6X|1|2S|G|2451
3J6X|1|2S|G|2452
3J6X|1|2S|U|2453
3J6X|1|2S|G|2454
3J6X|1|2S|U|2455
3J6X|1|2S|A|2456
3J6X|1|2S|G|2457
3J6X|1|2S|A|2458
3J6X|1|2S|A|2459
3J6X|1|2S|U|2460
3J6X|1|2S|A|2461
3J6X|1|2S|A|2462
3J6X|1|2S|G|2463
3J6X|1|2S|U|2464
3J6X|1|2S|G|2465
3J6X|1|2S|G|2466
3J6X|1|2S|G|2467
3J6X|1|2S|A|2468
3J6X|1|2S|G|2469
3J6X|1|2S|C|2470
3J6X|1|2S|U|2471
3J6X|1|2S|U|2472
3J6X|1|2S|C|2473
3J6X|1|2S|G|2474
3J6X|1|2S|G|2475
3J6X|1|2S|C|2476
3J6X|1|2S|G|2477
3J6X|1|2S|C|2478
3J6X|1|2S|C|2479
3J6X|1|2S|A|2480
3J6X|1|2S|G|2481
3J6X|1|2S|U|2482
3J6X|1|2S|G|2483
3J6X|1|2S|A|2484
3J6X|1|2S|A|2485
3J6X|1|2S|A|2486
3J6X|1|2S|U|2487
3J6X|1|2S|A|2488
3J6X|1|2S|C|2489
3J6X|1|2S|C|2490
3J6X|1|2S|A|2491
3J6X|1|2S|C|2492
3J6X|1|2S|U|2493
3J6X|1|2S|A|2494
3J6X|1|2S|C|2495
3J6X|1|2S|C|2496
3J6X|1|2S|U|2497
3J6X|1|2S|U|2498
3J6X|1|2S|U|2499

Current chains

Chain 2S: 25S ribosomal RNA

Nearby chains

Chain IR: TSV IRES mRNA
Chain L1: 60S ribosomal protein L1

HL_3J6X_119