HL_3J6X_121

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGCCCAUUCGGGUC

Length

14 nucleotides

Bulged bases

3J6X|1|1S|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|1S|G|487
3J6X|1|1S|G|488
3J6X|1|1S|C|489
3J6X|1|1S|C|490
3J6X|1|1S|C|491
3J6X|1|1S|A|492
3J6X|1|1S|U|493
3J6X|1|1S|U|494
3J6X|1|1S|C|495
3J6X|1|1S|G|496
3J6X|1|1S|G|497
3J6X|1|1S|G|498
3J6X|1|1S|U|499
3J6X|1|1S|C|500

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains