HL_3J6Y_002

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

3J6Y|1|1S|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_002 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2556

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

3J6Y|1|1S|C|70
3J6Y|1|1S|A|71
3J6Y|1|1S|A|72
3J6Y|1|1S|U|73
3J6Y|1|1S|U|74
3J6Y|1|1S|U|75
3J6Y|1|1S|A|76
3J6Y|1|1S|U|77
3J6Y|1|1S|A|78
3J6Y|1|1S|C|79
3J6Y|1|1S|A|80
3J6Y|1|1S|G|81

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6