Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J6Y_1191/2S/1862:1868GNRA
homologous
HL_8P9A_153
HL_34789.4
HL_3J6Y_0821/2S/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_3J6Y_1141/8S/108:114No text annotation
homologous
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_3J6Y_001No text annotation
HL_3J6Y_002No text annotation
HL_3J6Y_003GNRA related
HL_3J6Y_004No text annotation
HL_3J6Y_005No text annotation
HL_3J6Y_006T-loop with 1 bulged base
HL_3J6Y_007Mini UNCG
HL_3J6Y_008GNRA related
HL_3J6Y_009No text annotation
HL_3J6Y_116No text annotation
HL_3J6Y_010No text annotation
HL_3J6Y_011UNCG
HL_3J6Y_012No text annotation
HL_3J6Y_117No text annotation
HL_3J6Y_013No text annotation
HL_3J6Y_014No text annotation
HL_3J6Y_015GNRA variation
HL_3J6Y_016No text annotation
HL_3J6Y_017No text annotation
HL_3J6Y_018No text annotation
HL_3J6Y_019Pseudoknot geometry
HL_3J6Y_020No text annotation
HL_3J6Y_021GNRA
HL_3J6Y_022No text annotation
HL_3J6Y_023No text annotation
HL_3J6Y_024GNRA
HL_3J6Y_025GNRA
HL_3J6Y_026No text annotation
HL_3J6Y_027Anticodon loop related
HL_3J6Y_028GNRA
HL_3J6Y_029No text annotation
HL_3J6Y_030No text annotation
HL_3J6Y_031GNRA
HL_3J6Y_032GNRA
HL_3J6Y_033No text annotation
HL_3J6Y_034No text annotation
HL_3J6Y_035No text annotation
HL_3J6Y_036GNRA variation
HL_3J6Y_037No text annotation
HL_3J6Y_038No text annotation
HL_3J6Y_039No text annotation
HL_3J6Y_040No text annotation
HL_3J6Y_041T-loop with 2 stacked bulged bases
HL_3J6Y_042No text annotation
HL_3J6Y_043T-loop with unstacked turn
HL_3J6Y_044No text annotation
HL_3J6Y_045Pseudoknot geometry
HL_3J6Y_046GNRA
HL_3J6Y_047GNRA
HL_3J6Y_048No text annotation
HL_3J6Y_118No text annotation
HL_3J6Y_049GNRA
HL_3J6Y_050T-loop with 2 stacked bulged bases
HL_3J6Y_051No text annotation
HL_3J6Y_052GNRA
HL_3J6Y_053GNRA
HL_3J6Y_054No text annotation
HL_3J6Y_055GNRA
HL_3J6Y_056No text annotation
HL_3J6Y_057No text annotation
HL_3J6Y_058Externally structured
HL_3J6Y_059GNRA
HL_3J6Y_060No text annotation
HL_3J6Y_061GNRA
HL_3J6Y_062No text annotation
HL_3J6Y_063No text annotation
HL_3J6Y_064GNRA wlth tandem sheared
HL_3J6Y_065No text annotation
HL_3J6Y_066GNRA
HL_3J6Y_067T-loop with 2 stacked bulged bases
HL_3J6Y_068Pseudoknot geometry with 3' bulge
HL_3J6Y_069GNRA variation
HL_3J6Y_070No text annotation
HL_3J6Y_071No text annotation
HL_3J6Y_072GNRA
HL_3J6Y_073No text annotation
HL_3J6Y_074No text annotation
HL_3J6Y_075No text annotation
HL_3J6Y_076Mini UNCG
HL_3J6Y_077No text annotation
HL_3J6Y_078GNRA wlth extra near cWW
HL_3J6Y_079UNCG
HL_3J6Y_080No text annotation
HL_3J6Y_081No text annotation
HL_3J6Y_083No text annotation
HL_3J6Y_084GNRA
HL_3J6Y_085GNRA
HL_3J6Y_086No text annotation
HL_3J6Y_087No text annotation
HL_3J6Y_088No text annotation
HL_3J6Y_120No text annotation
HL_3J6Y_089No text annotation
HL_3J6Y_090No text annotation
HL_3J6Y_121No text annotation
HL_3J6Y_091Externally structured
HL_3J6Y_092No text annotation
HL_3J6Y_093No text annotation
HL_3J6Y_094No text annotation
HL_3J6Y_095Pseudoknot geometry
HL_3J6Y_096No text annotation
HL_3J6Y_097GNRA
HL_3J6Y_098Pseudoknot geometry
HL_3J6Y_099No text annotation
HL_3J6Y_100No text annotation
HL_3J6Y_101No text annotation
HL_3J6Y_102GNRA
HL_3J6Y_103GNRA
HL_3J6Y_104No text annotation
HL_3J6Y_122No text annotation
HL_3J6Y_105No text annotation
HL_3J6Y_106No text annotation
HL_3J6Y_107No text annotation
HL_3J6Y_108No text annotation
HL_3J6Y_109Mini UNCG
HL_3J6Y_110No text annotation
HL_3J6Y_111GNRA
HL_3J6Y_112Pseudoknot with intercalation
HL_3J6Y_113No text annotation
HL_3J6Y_115No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J6Y_1111/2S/752:753,
1/2S/779:781
Single bulged A
homologous
IL_8C3A_026
NA

Problematic loops

#loop idProblemSequence
IL_3J6Y_001Single bulged C
IL_3J6Y_002Isolated non-canonical cWW pair
IL_3J6Y_003Triple sheared related
IL_3J6Y_004No text annotation
IL_3J6Y_005Minor groove platform
IL_3J6Y_006No text annotation
IL_3J6Y_007No text annotation
IL_3J6Y_008Tandem non-canonical cWW pairs
IL_3J6Y_009Multiple bulged bases
IL_3J6Y_010No text annotation
IL_3J6Y_011tWH-tWH-tHW-tHW
IL_3J6Y_012Isolated cWH basepair
IL_3J6Y_013Double sheared
IL_3J6Y_014Major groove platform with extra cWW
IL_3J6Y_015Isolated non-canonical cWW pair
IL_3J6Y_016Single bulged A
IL_3J6Y_017No text annotation
IL_3J6Y_018Single bulged U
IL_3J6Y_019Kink-turn with non-sequential stacking
IL_3J6Y_020No text annotation
IL_3J6Y_231No text annotation
IL_3J6Y_021No text annotation
IL_3J6Y_022Isolated cWH basepair
IL_3J6Y_023Isolated near basepair
IL_3J6Y_024Single bulged U
IL_3J6Y_025C-loop
IL_3J6Y_026Single bulged G
IL_3J6Y_027No text annotation
IL_3J6Y_028Minor groove platform
IL_3J6Y_029Minor groove platform
IL_3J6Y_030SSU/LSU pseudoknot
IL_3J6Y_031Single bulged U
IL_3J6Y_032Kink-turn related
IL_3J6Y_033No text annotation
IL_3J6Y_034Isolated non-canonical cWW pair
IL_3J6Y_035tSH-tHW-tHS
IL_3J6Y_036Isolated non-canonical cWW pair
IL_3J6Y_037No text annotation
IL_3J6Y_038Major groove minor groove platform; mini C-loop
IL_3J6Y_039Tandem non-canonical cWW pairs
IL_3J6Y_232Isolated non-canonical cWW pair
IL_3J6Y_040No text annotation
IL_3J6Y_041No text annotation
IL_3J6Y_042Major groove platform; stack outside cWW
IL_3J6Y_233Single bulged U
IL_3J6Y_043Isolated non-canonical cWW pair
IL_3J6Y_044Isolated non-canonical cWW pair
IL_3J6Y_045Tandem non-canonical cWW pairs
IL_3J6Y_046Isolated non-canonical cWW pair
IL_3J6Y_047Kink-turn related
IL_3J6Y_048Other IL
IL_3J6Y_049tSH-tHW-tHS
IL_3J6Y_050No text annotation
IL_3J6Y_051Tandem non-canonical cWW pairs
IL_3J6Y_052Single bulged U
IL_3J6Y_0538x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3J6Y_054Single bulged A
IL_3J6Y_055Single bulged G
IL_3J6Y_056C-loop
IL_3J6Y_057Isolated non-canonical cWW pair
IL_3J6Y_058Minor groove platform
IL_3J6Y_059Isolated non-canonical cWW pair
IL_3J6Y_060No text annotation
IL_3J6Y_234Kink-turn
IL_3J6Y_061No text annotation
IL_3J6Y_062No text annotation
IL_3J6Y_063Single bulged U
IL_3J6Y_064Isolated cWS basepair
IL_3J6Y_235No text annotation
IL_3J6Y_065Minor groove platform with extra cWW
IL_3J6Y_066Single bulged A
IL_3J6Y_067Isolated cWH basepair
IL_3J6Y_068Minor groove platform
IL_3J6Y_069Isolated non-canonical cWW pair
IL_3J6Y_070Minor groove platform
IL_3J6Y_071Isolated non-canonical cWW pair
IL_3J6Y_072Major groove platform; stack outside cWW
IL_3J6Y_257No text annotation
IL_3J6Y_236No text annotation
IL_3J6Y_073180 degree turn
IL_3J6Y_074Tandem non-canonical cWW pairs
IL_3J6Y_075No text annotation
IL_3J6Y_076No text annotation
IL_3J6Y_077No text annotation
IL_3J6Y_078Isolated non-canonical cWW pair
IL_3J6Y_079No text annotation
IL_3J6Y_080Isolated non-canonical cWW pair
IL_3J6Y_081Double sheared
IL_3J6Y_237Single bulged U
IL_3J6Y_082Isolated cWS basepair
IL_3J6Y_083Isolated non-canonical cWW pair
IL_3J6Y_084Double sheared
IL_3J6Y_085Isolated non-canonical cWW pair
IL_3J6Y_086Tandem non-canonical cWW pairs
IL_3J6Y_087Triple sheared
IL_3J6Y_088No text annotation
IL_3J6Y_089Single bulged C
IL_3J6Y_238Tandem non-canonical cWW pairs
IL_3J6Y_090Single bulged U
IL_3J6Y_091No text annotation
IL_3J6Y_092tSH-tHW-tHH-tHS
IL_3J6Y_093No text annotation
IL_3J6Y_094No text annotation
IL_3J6Y_095Isolated non-canonical cWW pair
IL_3J6Y_096Single stack bend
IL_3J6Y_097No text annotation
IL_3J6Y_239No text annotation
IL_3J6Y_098Major groove platform with extra pair
IL_3J6Y_099Single bulged U
IL_3J6Y_240Other IL
IL_3J6Y_100Single bulged A
IL_3J6Y_101No text annotation
IL_3J6Y_102Triple sheared with non-canonical cWW
IL_3J6Y_103Isolated non-canonical cWW pair
IL_3J6Y_104No text annotation
IL_3J6Y_105No text annotation
IL_3J6Y_241Single bulged A
IL_3J6Y_258No text annotation
IL_3J6Y_106No text annotation
IL_3J6Y_107No text annotation
IL_3J6Y_108Isolated non-canonical cWW pair
IL_3J6Y_109No text annotation
IL_3J6Y_242No text annotation
IL_3J6Y_110Triple sheared related
IL_3J6Y_112Single bulged U
IL_3J6Y_113No text annotation
IL_3J6Y_114Isolated non-canonical cWW pair
IL_3J6Y_115No text annotation
IL_3J6Y_116Single bulged G
IL_3J6Y_117Triple sheared
IL_3J6Y_118Major groove platform with extra cWW
IL_3J6Y_119Single bulged U
IL_3J6Y_120Multiple bulged bases
IL_3J6Y_121Isolated non-canonical cWW pair
IL_3J6Y_122No text annotation
IL_3J6Y_123180 degree turn
IL_3J6Y_243Single bulged G
IL_3J6Y_124Other IL
IL_3J6Y_1257x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3J6Y_244Minor groove platform
IL_3J6Y_126Major groove platform with extra cWW
IL_3J6Y_127C-loop with bulged stacked A's
IL_3J6Y_128Tandem non-canonical cWW pairs
IL_3J6Y_129Isolated non-canonical cWW pair
IL_3J6Y_130No text annotation
IL_3J6Y_131Isolated non-canonical cWW pair
IL_3J6Y_132Single bulged G
IL_3J6Y_133Isolated non-canonical cWW pair
IL_3J6Y_134UAA/GAN
IL_3J6Y_135SSU/LSU pseudoknot
IL_3J6Y_136Single bulged U
IL_3J6Y_137No text annotation
IL_3J6Y_138No text annotation
IL_3J6Y_139Single bulged U
IL_3J6Y_140Kink-turn
IL_3J6Y_141No text annotation
IL_3J6Y_142Major groove platform with extra cWW
IL_3J6Y_143Isolated cWS basepair
IL_3J6Y_245No text annotation
IL_3J6Y_144Single bulged A
IL_3J6Y_145Kink-turn
IL_3J6Y_146Single bulged A
IL_3J6Y_246No text annotation
IL_3J6Y_1478x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_3J6Y_148No text annotation
IL_3J6Y_247C-loop
IL_3J6Y_149UAA/GAN
IL_3J6Y_150No text annotation
IL_3J6Y_151No text annotation
IL_3J6Y_259No text annotation
IL_3J6Y_152No text annotation
IL_3J6Y_153No text annotation
IL_3J6Y_154Triple sheared
IL_3J6Y_155Isolated non-canonical cWW pair
IL_3J6Y_156Single bulged C
IL_3J6Y_157Single stack bend
IL_3J6Y_158No text annotation
IL_3J6Y_159No text annotation
IL_3J6Y_160No text annotation
IL_3J6Y_161No text annotation
IL_3J6Y_162No text annotation
IL_3J6Y_163Major groove platform; stack outside cWW
IL_3J6Y_248No text annotation
IL_3J6Y_164No text annotation
IL_3J6Y_165tSH-tSH-tHH-tHS
IL_3J6Y_166Isolated non-canonical cWW pair
IL_3J6Y_249No text annotation
IL_3J6Y_167No text annotation
IL_3J6Y_168No text annotation
IL_3J6Y_169No text annotation
IL_3J6Y_170Single bulged A
IL_3J6Y_171Kink-turn related
IL_3J6Y_172Major groove intercalation
IL_3J6Y_173Major groove intercalation
IL_3J6Y_174No text annotation
IL_3J6Y_175No text annotation
IL_3J6Y_176Bulged stacked bases
IL_3J6Y_177No text annotation
IL_3J6Y_178No text annotation
IL_3J6Y_179No text annotation
IL_3J6Y_180Single bulged U
IL_3J6Y_181Minor groove platform
IL_3J6Y_182Isolated tHS basepair with bulges
IL_3J6Y_183No text annotation
IL_3J6Y_250No text annotation
IL_3J6Y_184Single bulged U
IL_3J6Y_185No text annotation
IL_3J6Y_186No text annotation
IL_3J6Y_187Single bulged A
IL_3J6Y_188No text annotation
IL_3J6Y_189Tandem non-canonical cWW pairs
IL_3J6Y_190Single stack bend
IL_3J6Y_191No text annotation
IL_3J6Y_192Triple sheared
IL_3J6Y_251No text annotation
IL_3J6Y_193Major groove platform with extra pair
IL_3J6Y_194Isolated non-canonical cWW with bulges
IL_3J6Y_195No text annotation
IL_3J6Y_252No text annotation
IL_3J6Y_196No text annotation
IL_3J6Y_197Isolated non-canonical cWW pair
IL_3J6Y_198Single bulged A
IL_3J6Y_199Double sheared
IL_3J6Y_200Isolated non-canonical cWW pair
IL_3J6Y_2018x7 Sarcin-Ricin; G-bulge
IL_3J6Y_253Sarcin-Ricin target in LSU H95; G-bulge
IL_3J6Y_202Major groove minor groove platform with tHH
IL_3J6Y_203UAA/GAN related
IL_3J6Y_204No text annotation
IL_3J6Y_205UAA/GAN
IL_3J6Y_206Tandem non-canonical cWW pairs
IL_3J6Y_254Isolated non-canonical cWW pair
IL_3J6Y_207Isolated non-canonical cWW pair
IL_3J6Y_208Single bulged A
IL_3J6Y_209No text annotation
IL_3J6Y_210Single bulged U
IL_3J6Y_211No text annotation
IL_3J6Y_212Isolated non-canonical cWW pair
IL_3J6Y_213Tandem non-canonical cWW pairs
IL_3J6Y_214Tandem non-canonical cWW pairs
IL_3J6Y_215Single bulged U
IL_3J6Y_216Single bulged U
IL_3J6Y_217No text annotation
IL_3J6Y_218No text annotation
IL_3J6Y_219Single bulged U
IL_3J6Y_220Double sheared; A in syn
IL_3J6Y_260Tandem non-canonical cWW pairs
IL_3J6Y_255Triple non-canonical cWW pairs
IL_3J6Y_221Multiple bulged bases
IL_3J6Y_222Single bulged A
IL_3J6Y_223Minor groove platform related
IL_3J6Y_224Minor groove platform
IL_3J6Y_225Single stack bend
IL_3J6Y_226Symmetric double minor groove platform
IL_3J6Y_227No text annotation
IL_3J6Y_2568x7 Sarcin-Ricin; G-bulge
IL_3J6Y_228Isolated non-canonical cWW pair
IL_3J6Y_229Isolated non-canonical cWW pair
IL_3J6Y_230Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J6Y_0431/2S/2529:2532,
1/2S/2547:2563,
1/2S/2578:2581
No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_3J6Y_0281/2S/2886:2889,
1/2S/2914:2916,
1/2S/2930:2936
No text annotation
homologous
J3_5TBW_014
NA
J4_3J6Y_0021/1S/622:624,
1/1S/975:980,
1/1S/1021:1032,
1/1S/1103:1104
No text annotation
homologous
J4_8C3A_022
NA
J5_3J6Y_0111/2S/2399:2406,
1/2S/2815:2823,
1/2S/2867:2875,
1/2S/2952:2957,
1/2S/2975:2980
No text annotation

Problematic loops

#loop idProblemSequence
J3_3J6Y_001No text annotation
J3_3J6Y_032No text annotation
J3_3J6Y_002No text annotation
J3_3J6Y_033No text annotation
J3_3J6Y_003No text annotation
J3_3J6Y_004No text annotation
J3_3J6Y_005No text annotation
J3_3J6Y_006No text annotation
J3_3J6Y_007No text annotation
J3_3J6Y_008No text annotation
J3_3J6Y_009No text annotation
J3_3J6Y_010No text annotation
J3_3J6Y_011No text annotation
J3_3J6Y_012No text annotation
J3_3J6Y_034No text annotation
J3_3J6Y_013No text annotation
J3_3J6Y_014No text annotation
J3_3J6Y_035No text annotation
J3_3J6Y_036No text annotation
J3_3J6Y_037No text annotation
J3_3J6Y_015No text annotation
J3_3J6Y_038No text annotation
J3_3J6Y_039No text annotation
J3_3J6Y_016No text annotation
J3_3J6Y_017No text annotation
J3_3J6Y_018No text annotation
J3_3J6Y_019No text annotation
J3_3J6Y_020No text annotation
J3_3J6Y_040No text annotation
J3_3J6Y_021No text annotation
J3_3J6Y_022No text annotation
J3_3J6Y_023No text annotation
J3_3J6Y_047No text annotation
J3_3J6Y_041No text annotation
J3_3J6Y_024No text annotation
J3_3J6Y_042No text annotation
J3_3J6Y_025No text annotation
J3_3J6Y_026No text annotation
J3_3J6Y_044No text annotation
J3_3J6Y_027No text annotation
J3_3J6Y_045No text annotation
J3_3J6Y_029No text annotation
J3_3J6Y_046No text annotation
J3_3J6Y_030No text annotation
J3_3J6Y_031No text annotation
J4_3J6Y_001No text annotation
J4_3J6Y_003No text annotation
J4_3J6Y_004No text annotation
J4_3J6Y_005No text annotation
J4_3J6Y_012No text annotation
J4_3J6Y_006No text annotation
J4_3J6Y_007No text annotation
J4_3J6Y_008No text annotation
J4_3J6Y_009No text annotation
J4_3J6Y_010No text annotation
J4_3J6Y_011No text annotation
J5_3J6Y_001No text annotation
J5_3J6Y_002No text annotation
J5_3J6Y_003No text annotation
J5_3J6Y_004No text annotation
J5_3J6Y_005No text annotation
J5_3J6Y_006No text annotation
J5_3J6Y_007No text annotation
J5_3J6Y_008No text annotation
J5_3J6Y_009No text annotation
J5_3J6Y_010No text annotation
J5_3J6Y_012No text annotation
J6_3J6Y_003No text annotation
J6_3J6Y_001No text annotation
J6_3J6Y_002No text annotation
J7_3J6Y_002No text annotation
J7_3J6Y_001No text annotation

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