HL_3J6Y_009
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUAAGGGU
- Length
- 8 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_009 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3891
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90617.4
- Basepair signature
- cWW-tSH
- Number of instances in this motif group
- 9
Unit IDs
3J6Y|1|1S|A|367
3J6Y|1|1S|U|368
3J6Y|1|1S|A|369
3J6Y|1|1S|A|370
3J6Y|1|1S|G|371
3J6Y|1|1S|G|372
3J6Y|1|1S|G|373
3J6Y|1|1S|U|374
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 22
- 40S ribosomal protein S22
- Chain 23
- 40S ribosomal protein S23
- Chain S2
- 40S ribosomal protein S2
- Chain S9
- 40S ribosomal protein S9
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