HL_3J6Y_016
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC
- Length
- 33 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|718, 3J6Y|1|1S|U|719, 3J6Y|1|1S|U|721, 3J6Y|1|1S|U|728
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|1S|G|703
3J6Y|1|1S|C|704
3J6Y|1|1S|U|705
3J6Y|1|1S|A|706
3J6Y|1|1S|A|707
3J6Y|1|1S|C|708
3J6Y|1|1S|C|709
3J6Y|1|1S|U|710
3J6Y|1|1S|U|711
3J6Y|1|1S|G|712
3J6Y|1|1S|A|713
3J6Y|1|1S|G|714
3J6Y|1|1S|U|715
3J6Y|1|1S|C|716
3J6Y|1|1S|C|717
3J6Y|1|1S|U|718
3J6Y|1|1S|U|719
3J6Y|1|1S|G|720
3J6Y|1|1S|U|721
3J6Y|1|1S|G|722
3J6Y|1|1S|G|723
3J6Y|1|1S|C|724
3J6Y|1|1S|U|725
3J6Y|1|1S|C|726
3J6Y|1|1S|U|727
3J6Y|1|1S|U|728
3J6Y|1|1S|G|729
3J6Y|1|1S|G|730
3J6Y|1|1S|C|731
3J6Y|1|1S|G|732
3J6Y|1|1S|A|733
3J6Y|1|1S|A|734
3J6Y|1|1S|C|735
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
Coloring options: