HL_3J6Y_023

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|U|1055
3J6Y|1|1S|U|1056
3J6Y|1|1S|U|1057
3J6Y|1|1S|U|1058
3J6Y|1|1S|U|1059
3J6Y|1|1S|U|1060
3J6Y|1|1S|A|1061
3J6Y|1|1S|A|1062
3J6Y|1|1S|U|1063
3J6Y|1|1S|G|1064

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 27

40S ribosomal protein S27

Chain S1

40S ribosomal protein S1