HL_3J6Y_025

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_025 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1224

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|1S|C|1121
3J6Y|1|1S|G|1122
3J6Y|1|1S|C|1123
3J6Y|1|1S|A|1124
3J6Y|1|1S|A|1125
3J6Y|1|1S|G|1126

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 81

60S ribosomal protein L41

Chain 83

60S ribosomal protein L43