HL_3J6Y_028

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_028 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.2553

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|1S|A|1296
3J6Y|1|1S|G|1297
3J6Y|1|1S|U|1298
3J6Y|1|1S|G|1299
3J6Y|1|1S|A|1300
3J6Y|1|1S|U|1301

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S0

40S ribosomal protein S0

Chain S2

40S ribosomal protein S2