HL_3J6Y_031

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

3J6Y|1|1S|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_031 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3985

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

3J6Y|1|1S|U|1396
3J6Y|1|1S|U|1397
3J6Y|1|1S|U|1398
3J6Y|1|1S|C|1399
3J6Y|1|1S|A|1400
3J6Y|1|1S|A|1401
3J6Y|1|1S|G|1402

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain 28

40S ribosomal protein S28