HL_3J6Y_035

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUAGAGAAGGGGGCAACUCCAUCUCAGA

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|1S|U|1687
3J6Y|1|1S|U|1688
3J6Y|1|1S|A|1689
3J6Y|1|1S|G|1690
3J6Y|1|1S|A|1691
3J6Y|1|1S|G|1692
3J6Y|1|1S|A|1693
3J6Y|1|1S|A|1694
3J6Y|1|1S|G|1695
3J6Y|1|1S|G|1696
3J6Y|1|1S|G|1697
3J6Y|1|1S|G|1698
3J6Y|1|1S|G|1699
3J6Y|1|1S|C|1700
3J6Y|1|1S|A|1701
3J6Y|1|1S|A|1702
3J6Y|1|1S|C|1703
3J6Y|1|1S|U|1704
3J6Y|1|1S|C|1705
3J6Y|1|1S|C|1706
3J6Y|1|1S|A|1707
3J6Y|1|1S|U|1708
3J6Y|1|1S|C|1709
3J6Y|1|1S|U|1710
3J6Y|1|1S|C|1711
3J6Y|1|1S|A|1712
3J6Y|1|1S|G|1713
3J6Y|1|1S|A|1714

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6