HL_3J6Y_041
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 3J6Y|1|2S|C|200
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_041 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.2789
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
3J6Y|1|2S|U|194
3J6Y|1|2S|U|195
3J6Y|1|2S|G|196
3J6Y|1|2S|G|197
3J6Y|1|2S|A|198
3J6Y|1|2S|A|199
3J6Y|1|2S|C|200
3J6Y|1|2S|A|201
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 66
- 60S ribosomal protein L26
- Chain L4
- 60S ribosomal protein L4
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