HL_3J6Y_045
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_045 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.2105
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3J6Y|1|2S|G|303
3J6Y|1|2S|G|304
3J6Y|1|2S|U|305
3J6Y|1|2S|A|306
3J6Y|1|2S|A|307
3J6Y|1|2S|A|308
3J6Y|1|2S|U|309
3J6Y|1|2S|U|310
3J6Y|1|2S|C|311
3J6Y|1|2S|C|312
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 68
- 60S ribosomal protein L28
- Chain 76
- 60S ribosomal protein L36
- Chain 82
- 60S ribosomal protein L42
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