HL_3J6Y_048

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

3J6Y|1|2S|U|545, 3J6Y|1|2S|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|G|542
3J6Y|1|2S|C|543
3J6Y|1|2S|C|544
3J6Y|1|2S|U|545
3J6Y|1|2S|C|546
3J6Y|1|2S|G|547
3J6Y|1|2S|G|548
3J6Y|1|2S|U|549

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains