HL_3J6Y_052

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_052 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1724

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|U|707
3J6Y|1|2S|G|708
3J6Y|1|2S|A|709
3J6Y|1|2S|A|710
3J6Y|1|2S|A|711
3J6Y|1|2S|G|712

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 53

60S ribosomal protein L13

Chain 58

60S ribosomal protein L18

Chain 68

60S ribosomal protein L28

Chain 76

60S ribosomal protein L36