3D structure

PDB id
3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.1 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J6Y_052 not in the Motif Atlas
Homologous match to HL_8C3A_016
Geometric discrepancy: 0.1724
The information below is about HL_8C3A_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

3J6Y|1|2S|U|707
3J6Y|1|2S|G|708
3J6Y|1|2S|A|709
3J6Y|1|2S|A|710
3J6Y|1|2S|A|711
3J6Y|1|2S|G|712

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 53
60S ribosomal protein L13
Chain 58
60S ribosomal protein L18
Chain 68
60S ribosomal protein L28
Chain 76
60S ribosomal protein L36

Coloring options:


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