HL_3J6Y_061

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

3J6Y|1|2S|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_061 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1658

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|G|1126
3J6Y|1|2S|G|1127
3J6Y|1|2S|U|1128
3J6Y|1|2S|A|1129
3J6Y|1|2S|A|1130
3J6Y|1|2S|G|1131
3J6Y|1|2S|C|1132

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10