HL_3J6Y_069

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_069 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.197

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|G|1544
3J6Y|1|2S|A|1545
3J6Y|1|2S|A|1546
3J6Y|1|2S|G|1547
3J6Y|1|2S|C|1548
3J6Y|1|2S|U|1549

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain 77

60S ribosomal protein L37