HL_3J6Y_078

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUGAACAGC

Length

9 nucleotides

Bulged bases

3J6Y|1|2S|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_078 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2324

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J6Y|1|2S|G|1861
3J6Y|1|2S|U|1862
3J6Y|1|2S|G|1863
3J6Y|1|2S|A|1864
3J6Y|1|2S|A|1865
3J6Y|1|2S|C|1866
3J6Y|1|2S|A|1867
3J6Y|1|2S|G|1868
3J6Y|1|2S|C|1869

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 59

60S ribosomal protein L19