HL_3J6Y_084

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

3J6Y|1|2S|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_084 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2001

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|A|2164
3J6Y|1|2S|G|2165
3J6Y|1|2S|A|2166
3J6Y|1|2S|A|2167
3J6Y|1|2S|A|2168
3J6Y|1|2S|G|2169
3J6Y|1|2S|U|2170

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain L2

60S ribosomal protein L2

Chain L8

60S ribosomal protein L8