HL_3J6Y_085

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_085 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1519

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|A|2220
3J6Y|1|2S|G|2221
3J6Y|1|2S|A|2222
3J6Y|1|2S|A|2223
3J6Y|1|2S|A|2224
3J6Y|1|2S|U|2225

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L36

Chain 82

60S ribosomal protein L42

Chain L1

60S ribosomal protein L1