HL_3J6Y_089

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUGGGAGCUUCGGCGCCAGUGAAAUACCAC

Length

30 nucleotides

Bulged bases

3J6Y|1|2S|U|2472, 3J6Y|1|2S|A|2484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|G|2463
3J6Y|1|2S|U|2464
3J6Y|1|2S|G|2465
3J6Y|1|2S|G|2466
3J6Y|1|2S|G|2467
3J6Y|1|2S|A|2468
3J6Y|1|2S|G|2469
3J6Y|1|2S|C|2470
3J6Y|1|2S|U|2471
3J6Y|1|2S|U|2472
3J6Y|1|2S|C|2473
3J6Y|1|2S|G|2474
3J6Y|1|2S|G|2475
3J6Y|1|2S|C|2476
3J6Y|1|2S|G|2477
3J6Y|1|2S|C|2478
3J6Y|1|2S|C|2479
3J6Y|1|2S|A|2480
3J6Y|1|2S|G|2481
3J6Y|1|2S|U|2482
3J6Y|1|2S|G|2483
3J6Y|1|2S|A|2484
3J6Y|1|2S|A|2485
3J6Y|1|2S|A|2486
3J6Y|1|2S|U|2487
3J6Y|1|2S|A|2488
3J6Y|1|2S|C|2489
3J6Y|1|2S|C|2490
3J6Y|1|2S|A|2491
3J6Y|1|2S|C|2492

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain IR

TSV IRES mRNA

Chain L1

60S ribosomal protein L1