HL_3J6Y_092

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3J6Y|1|2S|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_092 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.186

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3J6Y|1|2S|C|2616
3J6Y|1|2S|U|2617
3J6Y|1|2S|G|2618
3J6Y|1|2S|G|2619
3J6Y|1|2S|G|2620
3J6Y|1|2S|G|2621
3J6Y|1|2S|C|2622
3J6Y|1|2S|G|2623
3J6Y|1|2S|G|2624

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 69

60S ribosomal protein L29