HL_3J6Y_095
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_095 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.2122
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
3J6Y|1|2S|C|2693
3J6Y|1|2S|A|2694
3J6Y|1|2S|A|2695
3J6Y|1|2S|A|2696
3J6Y|1|2S|A|2697
3J6Y|1|2S|G|2698
3J6Y|1|2S|G|2699
3J6Y|1|2S|G|2700
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 50
- 60S ribosomal protein L10
- Chain 61
- 60S ribosomal protein L21
Coloring options: