HL_3J6Y_097

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_097 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1843

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J6Y|1|2S|U|2744
3J6Y|1|2S|G|2745
3J6Y|1|2S|A|2746
3J6Y|1|2S|A|2747
3J6Y|1|2S|A|2748
3J6Y|1|2S|G|2749

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 61

60S ribosomal protein L21

Chain 82

60S ribosomal protein L42

Chain L5

60S ribosomal protein L5