HL_3J6Y_115

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

3J6Y|1|8S|U|125, 3J6Y|1|8S|U|127, 3J6Y|1|8S|U|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_115 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.379

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3J6Y|1|8S|G|124
3J6Y|1|8S|U|125
3J6Y|1|8S|A|126
3J6Y|1|8S|U|127
3J6Y|1|8S|U|128
3J6Y|1|8S|C|129

Current chains

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA