HL_3J6Y_120
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCU
- Length
- 49 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|2453, 3J6Y|1|2S|A|2458, 3J6Y|1|2S|A|2459, 3J6Y|1|2S|U|2460, 3J6Y|1|2S|U|2472, 3J6Y|1|2S|A|2484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|A|2449
3J6Y|1|2S|G|2450
3J6Y|1|2S|G|2451
3J6Y|1|2S|G|2452
3J6Y|1|2S|U|2453
3J6Y|1|2S|G|2454
3J6Y|1|2S|U|2455
3J6Y|1|2S|A|2456
3J6Y|1|2S|G|2457
3J6Y|1|2S|A|2458
3J6Y|1|2S|A|2459
3J6Y|1|2S|U|2460
3J6Y|1|2S|A|2461
3J6Y|1|2S|A|2462
3J6Y|1|2S|G|2463
3J6Y|1|2S|U|2464
3J6Y|1|2S|G|2465
3J6Y|1|2S|G|2466
3J6Y|1|2S|G|2467
3J6Y|1|2S|A|2468
3J6Y|1|2S|G|2469
3J6Y|1|2S|C|2470
3J6Y|1|2S|U|2471
3J6Y|1|2S|U|2472
3J6Y|1|2S|C|2473
3J6Y|1|2S|G|2474
3J6Y|1|2S|G|2475
3J6Y|1|2S|C|2476
3J6Y|1|2S|G|2477
3J6Y|1|2S|C|2478
3J6Y|1|2S|C|2479
3J6Y|1|2S|A|2480
3J6Y|1|2S|G|2481
3J6Y|1|2S|U|2482
3J6Y|1|2S|G|2483
3J6Y|1|2S|A|2484
3J6Y|1|2S|A|2485
3J6Y|1|2S|A|2486
3J6Y|1|2S|U|2487
3J6Y|1|2S|A|2488
3J6Y|1|2S|C|2489
3J6Y|1|2S|C|2490
3J6Y|1|2S|A|2491
3J6Y|1|2S|C|2492
3J6Y|1|2S|U|2493
3J6Y|1|2S|A|2494
3J6Y|1|2S|C|2495
3J6Y|1|2S|C|2496
3J6Y|1|2S|U|2497
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain IR
- TSV IRES mRNA
- Chain L1
- 60S ribosomal protein L1
Coloring options: