HL_3J71_007
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 3J71|1|5|G|232, 3J71|1|5|U|233, 3J71|1|5|G|234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J71_007 not in the Motif Atlas
- Geometric match to HL_4V9F_012
- Geometric discrepancy: 0.2885
- The information below is about HL_4V9F_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.5
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 17
Unit IDs
3J71|1|5|G|230
3J71|1|5|U|231
3J71|1|5|G|232
3J71|1|5|U|233
3J71|1|5|G|234
3J71|1|5|A|235
3J71|1|5|G|236
3J71|1|5|G|237
3J71|1|5|C|238
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain Y
- Ribosomal protein uL24
Coloring options: