HL_3J71_030

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J71_030 not in the Motif Atlas

Geometric match to HL_3NPQ_001

Geometric discrepancy: 0.3301

The information below is about HL_3NPQ_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

3J71|1|5|C|2317
3J71|1|5|G|2318
3J71|1|5|C|2319
3J71|1|5|G|2320
3J71|1|5|G|2321
3J71|1|5|G|2322

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28