HL_3J71_044

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3J71|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J71_044 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1663

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

3J71|1|5|C|2872
3J71|1|5|U|2873
3J71|1|5|U|2874
3J71|1|5|C|2875
3J71|1|5|G|2876
3J71|1|5|G|2877

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43