HL_3J71_056
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 3J71|1|5|A|4214, 3J71|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J71_056 not in the Motif Atlas
- Geometric match to HL_5J7L_187
- Geometric discrepancy: 0.2582
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
3J71|1|5|U|4210
3J71|1|5|C|4211
3J71|1|5|A|4212
3J71|1|5|A|4213
3J71|1|5|A|4214
3J71|1|5|C|4215
3J71|1|5|G|4216
3J71|1|5|G|4217
3J71|1|5|U|4218
3J71|1|5|A|4219
3J71|1|5|A|4220
3J71|1|5|C|4221
3J71|1|5|G|4222
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- Ribosomal protein uL16
- Chain T
- Ribosomal protein eL21
- Chain b
- Ribosomal protein eL29
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