HL_3J72_077
3D structure
- PDB id
- 3J72 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 3J72|1|5|C|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J72_077 not in the Motif Atlas
- Geometric match to HL_5DH6_002
- Geometric discrepancy: 0.3077
- The information below is about HL_5DH6_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_13999.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
3J72|1|5|U|204
3J72|1|5|C|205
3J72|1|5|U|206
3J72|1|5|G|207
3J72|1|5|A|208
3J72|1|5|U|209
3J72|1|5|C|210
3J72|1|5|G|211
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain Y
- Ribosomal protein uL24
- Chain e
- Ribosomal protein eL32
Coloring options: