HL_3J73_016

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

3J73|1|5|G|1408, 3J73|1|5|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3689

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

3J73|1|5|C|1405
3J73|1|5|G|1406
3J73|1|5|C|1407
3J73|1|5|G|1408
3J73|1|5|C|1409
3J73|1|5|U|1410
3J73|1|5|C|1411
3J73|1|5|G|1412

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain b

Ribosomal protein eL29