3J73 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J73_001 | 1/5/30:52 | No text annotation | ||
| HL_3J73_002 | 1/5/68:73 | No text annotation | geometric HL_5TBW_002 NA | |
| HL_3J73_003 | 1/5/88:96 | No text annotation | ||
| HL_3J73_004 | 1/5/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J73_006 | 1/5/222:226 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J73_007 | 1/5/230:238 | T-loop with unstacked turn | geometric HL_4V9F_012 HL_27670.2 | |
| HL_3J73_008 | 1/5/285:302 | No text annotation | ||
| HL_3J73_009 | 1/5/313:324 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3J73_010 | 1/5/368:373 | GNRA | geometric HL_3NPQ_001 HL_37824.8 | |
| HL_3J73_011 | 1/5/393:398 | GNRA | geometric HL_6UFH_005 HL_37824.8 | |
| HL_3J73_012 | 1/5/1171:1190 | No text annotation | ||
| HL_3J73_013 | 1/5/1252:1258 | GNRA | geometric HL_4LFB_012 HL_37824.8 | |
| HL_3J73_014 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_014 NA | |
| HL_3J73_015 | 1/5/1364:1373 | No text annotation | ||
| HL_3J73_016 | 1/5/1405:1412 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3J73_017 | 1/5/1436:1448 | No text annotation | ||
| HL_3J73_018 | 1/5/1479:1486 | No text annotation | ||
| HL_3J73_019 | 1/5/1561:1566 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_3J73_020 | 1/5/1592:1603 | No text annotation | ||
| HL_3J73_021 | 1/5/1627:1635 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_3J73_022 | 1/5/1675:1680 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_3J73_023 | 1/5/1763:1769 | GNRA | geometric HL_3RG5_007 HL_37824.8 | |
| HL_3J73_024 | 1/5/1814:1823 | No text annotation | ||
| HL_3J73_025 | 1/5/1861:1873 | No text annotation | ||
| HL_3J73_026 | 1/5/1886:1893 | No text annotation | geometric HL_5TBW_026 NA | |
| HL_3J73_027 | 1/5/1978:1988 | No text annotation | ||
| HL_3J73_028 | 1/5/2006:2013 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_81538.2 | |
| HL_3J73_029 | 1/5/2130:2244 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_3J73_030 | 1/5/2317:2322 | GNRA | geometric HL_3NPQ_001 HL_37824.8 | |
| HL_3J73_031 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | geometric HL_7A0S_032 HL_28252.9 | |
| HL_3J73_032 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_3J73_033 | 1/5/2458:2463 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_3J73_034 | 1/5/2487:2491 | No text annotation | ||
| HL_3J73_035 | 1/5/2522:2533 | No text annotation | ||
| HL_3J73_036 | 1/5/2558:2569 | No text annotation | ||
| HL_3J73_037 | 1/5/2578:2583 | GNRA | geometric HL_5TBW_036 NA | |
| HL_3J73_038 | 1/5/2622:2634 | No text annotation | ||
| HL_3J73_039 | 1/5/2664:2670 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_3J73_040 | 1/5/2705:2710 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J73_041 | 1/5/2738:2742 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_3J73_042 | 1/5/2792:2799 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_3J73_043 | 1/5/2810:2816 | GNRA | geometric HL_5TBW_042 NA | |
| HL_3J73_044 | 1/5/2872:2877 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_3J73_045 | 1/5/3614:3618 | No text annotation | geometric HL_5TBW_045 NA | |
| HL_3J73_046 | 1/5/3639:3649 | No text annotation | geometric HL_4WF9_043 HL_01962.2 | |
| HL_3J73_047 | 1/5/3666:3676 | No text annotation | geometric HL_1HMH_004 NA | |
| HL_3J73_048 | 1/5/3724:3729 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_3J73_049 | 1/5/3757:3767 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_3J73_050 | 1/5/3781:3811 | No text annotation | ||
| HL_3J73_051 | 1/5/3873:3882 | No text annotation | geometric HL_5TBW_051 NA | |
| HL_3J73_052 | 1/5/4102:4107 | UNCG | geometric HL_4LFB_031 HL_34617.5 | |
| HL_3J73_053 | 1/5/4139:4145 | No text annotation | ||
| HL_3J73_054 | 1/5/4193:4201 | No text annotation | geometric HL_5TBW_054 NA | |
| HL_3J73_055 | 1/5/4210:4222 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
| HL_3J73_056 | 1/5/4250:4258 | No text annotation | geometric HL_5TBW_056 NA | |
| HL_3J73_059 | 1/5/4347:4365 | No text annotation | ||
| HL_3J73_060 | 1/5/4412:4430 | No text annotation | ||
| HL_3J73_061 | 1/5/4472:4483 | No text annotation | ||
| HL_3J73_062 | 1/5/4495:4505 | No text annotation | ||
| HL_3J73_063 | 1/5/4540:4545 | GNRA | geometric HL_3NPQ_001 HL_37824.8 | |
| HL_3J73_064 | 1/5/4603:4608 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_3J73_065 | 1/5/4644:4653 | No text annotation | ||
| HL_3J73_067 | 1/5/4907:4914 | No text annotation | ||
| HL_3J73_068 | 1/5/4972:4986 | No text annotation | ||
| HL_3J73_069 | 1/5/5018:5031 | No text annotation | ||
| HL_3J73_070 | 1/7/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3J73_071 | 1/7/86:91 | GNRA | geometric HL_5TBW_019 NA | |
| HL_3J73_072 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_3J73_074 | 1/8/107:112 | No text annotation | geometric HL_8P9A_188 HL_53890.2 | |
| HL_3J73_075 | 1/8/121:129 | No text annotation | ||
| HL_3J73_076 | 1/S2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_3J73_077 | 1/S2/69:80 | No text annotation | ||
| HL_3J73_078 | 1/S2/152:166 | No text annotation | ||
| HL_3J73_079 | 1/S2/197:202 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_3J73_080 | 1/S2/288:295 | No text annotation | ||
| HL_3J73_081 | 1/S2/322:329 | No text annotation | ||
| HL_3J73_082 | 1/S2/375:389 | No text annotation | ||
| HL_3J73_083 | 1/S2/413:424 | No text annotation | ||
| HL_3J73_084 | 1/S2/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_3J73_085 | 1/S2/462:467 | UNCG | geometric HL_6QN3_003 HL_34617.5 | |
| HL_3J73_086 | 1/S2/496:506 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3J73_087 | 1/S2/539:544 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_3J73_088 | 1/S2/566:584 | No text annotation | ||
| HL_3J73_089 | 1/S2/618:623 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_3J73_090 | 1/S2/698:732 | No text annotation | ||
| HL_3J73_092 | 1/S2/833:841 | No text annotation | ||
| HL_3J73_093 | 1/S2/885:901 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.1 | |
| HL_3J73_094 | 1/S2/957:966 | No text annotation | geometric HL_4V88_206 NA | |
| HL_3J73_095 | 1/S2/1054:1064 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_3J73_096 | 1/S2/1108:1124 | No text annotation | ||
| HL_3J73_097 | 1/S2/1141:1146 | GNRA | geometric HL_6UFH_005 HL_37824.8 | |
| HL_3J73_098 | 1/S2/1178:1183 | GNRA | geometric HL_6CB3_006 HL_37824.8 | |
| HL_3J73_099 | 1/S2/1280:1317 | No text annotation | ||
| HL_3J73_100 | 1/S2/1353:1358 | GNRA | geometric HL_5J7L_023 HL_37824.8 | |
| HL_3J73_101 | 1/S2/1363:1375 | No text annotation | ||
| HL_3J73_102 | 1/S2/1420:1427 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_3J73_103 | 1/S2/1460:1466 | No text annotation | geometric HL_1F1T_001 HL_59843.1 | |
| HL_3J73_104 | 1/S2/1565:1570 | GNRA | geometric HL_4V88_218 NA | |
| HL_3J73_105 | 1/S2/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_3J73_106 | 1/S2/1656:1668 | No text annotation | ||
| HL_3J73_108 | 1/S2/1847:1852 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_3J73_109 | 1/S5/13:22 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
| HL_3J73_110 | 1/S5/32:38 | Pseudoknot geometry | geometric HL_5VPO_138 HL_31585.4 | |
| HL_3J73_111 | 1/S5/52:62 | No text annotation | geometric HL_4V7M_040 HL_67079.1 | |
| HL_3J73_112 | 1/S6/14:22 | No text annotation | ||
| HL_3J73_113 | 1/S6/30:40 | No text annotation | ||
| HL_3J73_114 | 1/S6/55:58 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J73_005 | No text annotation | ||
| HL_3J73_057 | No text annotation | ||
| HL_3J73_058 | No text annotation | ||
| HL_3J73_066 | No text annotation | ||
| HL_3J73_073 | No text annotation | ||
| HL_3J73_091 | No text annotation | ||
| HL_3J73_107 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J73_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | geometric IL_7A0S_032 IL_61258.15 | |
| IL_3J73_003 | 1/5/26:29, 1/5/53:57 | No text annotation | ||
| IL_3J73_004 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_006 NA | |
| IL_3J73_006 | 1/5/122:128, 1/5/140:147 | No text annotation | ||
| IL_3J73_007 | 1/5/160:162, 1/5/273:276 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_3J73_008 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_3J73_009 | 1/5/180:182, 1/5/255:256 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_3J73_011 | 1/5/199:201, 1/5/214:215 | Single bulged U | geometric IL_4V9F_029 IL_89505.4 | |
| IL_3J73_012 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_3J73_013 | 1/5/348:350, 1/8/25:26 | Single bulged A | geometric IL_5J7L_246 IL_31462.7 | |
| IL_3J73_014 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_3J73_015 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_3J73_016 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
| IL_3J73_017 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_3J73_018 | 1/5/497:499, 1/5/655:656 | No text annotation | ||
| IL_3J73_019 | 1/5/500:505, 1/5/653:654 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_3J73_020 | 1/5/508:510, 1/5/649:650 | No text annotation | ||
| IL_3J73_022 | 1/5/722:724, 1/5/942:946 | No text annotation | ||
| IL_3J73_023 | 1/5/726:731, 1/5/938:940 | No text annotation | ||
| IL_3J73_024 | 1/5/731:735, 1/5/928:938 | No text annotation | ||
| IL_3J73_025 | 1/5/735:737, 1/5/927:928 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_3J73_026 | 1/5/740:742, 1/5/922:924 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_3J73_027 | 1/5/745:750, 1/5/912:919 | No text annotation | ||
| IL_3J73_028 | 1/5/750:756, 1/5/907:912 | No text annotation | ||
| IL_3J73_030 | 1/5/1074:1080, 1/5/1220:1236 | No text annotation | ||
| IL_3J73_031 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation | ||
| IL_3J73_033 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_7KGA_001 IL_61258.15 | |
| IL_3J73_036 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | ||
| IL_3J73_037 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_5J7L_333 IL_09705.15 | |
| IL_3J73_038 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_3J73_039 | 1/5/1472:1479, 1/5/1486:1492 | No text annotation | ||
| IL_3J73_040 | 1/5/1520:1526, 1/5/1648:1657 | No text annotation | ||
| IL_3J73_041 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_3J73_043 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_3J73_044 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_3J73_045 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_3J73_046 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_3J73_047 | 1/5/1737:1739, 1/5/1789:1792 | No text annotation | ||
| IL_3J73_048 | 1/5/1739:1745, 1/5/1785:1789 | No text annotation | geometric IL_4V9F_035 IL_06691.1 | |
| IL_3J73_049 | 1/5/1761:1763, 1/5/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_3J73_050 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_3J73_051 | 1/5/1910:1920, 1/5/2063:2066 | No text annotation | ||
| IL_3J73_052 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_3J73_053 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_3J73_054 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_3J73_055 | 1/5/1945:1951, 1/5/2032:2037 | No text annotation | ||
| IL_3J73_056 | 1/5/1957:1967, 1/5/2020:2026 | No text annotation | ||
| IL_3J73_057 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_3J73_058 | 1/5/2081:2085, 1/5/2272:2275 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_3J73_060 | 1/5/2302:2310, 1/5/2328:2333 | No text annotation | ||
| IL_3J73_061 | 1/5/2310:2315, 1/5/2324:2328 | No text annotation | ||
| IL_3J73_062 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_3J73_063 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_3J73_064 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_3J73_065 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_57744.1 | |
| IL_3J73_066 | 1/5/2589:2596, 1/5/2749:2756 | No text annotation | ||
| IL_3J73_067 | 1/5/2613:2615, 1/5/2722:2726 | No text annotation | ||
| IL_3J73_068 | 1/5/2642:2648, 1/5/2685:2692 | No text annotation | ||
| IL_3J73_069 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.14 | |
| IL_3J73_070 | 1/5/2655:2664, 1/5/2670:2679 | No text annotation | ||
| IL_3J73_071 | 1/5/2702:2705, 1/5/2710:2714 | No text annotation | ||
| IL_3J73_072 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn | geometric IL_7A0S_060 IL_67095.2 | |
| IL_3J73_073 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_3J73_074 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_4V9F_062 IL_76758.2 | |
| IL_3J73_075 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_3J73_076 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_3J73_077 | 1/5/2893:2897, 1/5/3602:3608 | No text annotation | ||
| IL_3J73_078 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation | ||
| IL_3J73_079 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | geometric IL_4V9F_064 IL_31462.7 | |
| IL_3J73_080 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | geometric IL_5TBW_083 NA | |
| IL_3J73_081 | 1/5/3700:3704, 1/5/3748:3750 | No text annotation | ||
| IL_3J73_083 | 1/5/3895:3902, 1/5/4558:4565 | No text annotation | ||
| IL_3J73_084 | 1/5/3912:3915, 1/5/4388:4390 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_87907.2 | |
| IL_3J73_085 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | geometric IL_7RQB_081 NA | |
| IL_3J73_087 | 1/5/3941:3943, 1/5/4069:4072 | No text annotation | ||
| IL_3J73_088 | 1/5/3943:3945, 1/5/4068:4069 | No text annotation | ||
| IL_3J73_089 | 1/5/3948:3949, 1/5/4063:4065 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_3J73_092 | 1/5/4078:4088, 1/5/4161:4168 | No text annotation | ||
| IL_3J73_093 | 1/5/4095:4099, 1/5/4110:4113 | No text annotation | ||
| IL_3J73_094 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | geometric IL_4V9F_079 IL_31462.7 | |
| IL_3J73_095 | 1/5/4238:4245, 1/5/4263:4286 | No text annotation | ||
| IL_3J73_096 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_3J73_097 | 1/5/4294:4299, 1/5/4311:4316 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_3J73_098 | 1/5/4403:4407, 1/5/4435:4440 | No text annotation | ||
| IL_3J73_099 | 1/5/4453:4458, 1/5/4520:4528 | No text annotation | ||
| IL_3J73_100 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_3J73_101 | 1/5/4536:4540, 1/5/4545:4550 | Other IL | geometric IL_4WF9_084 NA | |
| IL_3J73_102 | 1/5/4577:4582, 1/5/4721:4726 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_3J73_103 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5TBW_114 NA | |
| IL_3J73_104 | 1/5/4590:4594, 1/5/4616:4620 | Partly complementary | geometric IL_8D29_010 IL_49751.4 | |
| IL_3J73_105 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_3J73_106 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_3J73_108 | 1/5/4637:4641, 1/5/4658:4662 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_3J73_109 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | geometric IL_1KXK_003 IL_42626.2 | |
| IL_3J73_110 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | geometric IL_7RQB_055 NA | |
| IL_3J73_113 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_3J73_114 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
| IL_3J73_115 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
| IL_3J73_116 | 1/7/15:19, 1/7/59:64 | No text annotation | geometric IL_4V88_422 NA | |
| IL_3J73_118 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 IL_68140.4 | |
| IL_3J73_119 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_3J73_120 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_3J73_121 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
| IL_3J73_122 | 1/7/82:86, 1/7/91:94 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_3J73_123 | 1/S2/23:29, 1/S2/645:651 | No text annotation | ||
| IL_3J73_124 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_3J73_125 | 1/S2/37:40, 1/S2/514:518 | No text annotation | ||
| IL_3J73_126 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_3J73_128 | 1/S2/62:68, 1/S2/81:86 | No text annotation | ||
| IL_3J73_129 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_87907.2 | |
| IL_3J73_130 | 1/S2/110:116, 1/S2/347:351 | No text annotation | ||
| IL_3J73_131 | 1/S2/116:122, 1/S2/342:347 | No text annotation | ||
| IL_3J73_132 | 1/S2/123:125, 1/S2/338:341 | No text annotation | ||
| IL_3J73_133 | 1/S2/145:151, 1/S2/167:174 | No text annotation | geometric IL_8CRE_400 IL_80604.6 | |
| IL_3J73_134 | 1/S2/187:192, 1/S2/207:212 | Double sheared; A in syn; two near cWW pairs | geometric IL_4N0T_001 IL_71294.3 | |
| IL_3J73_135 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_3J73_136 | 1/S2/317:320, 1/S2/331:333 | No text annotation | geometric IL_4V88_400 NA | |
| IL_3J73_137 | 1/S2/358:364, 1/S2/396:404 | No text annotation | ||
| IL_3J73_138 | 1/S2/365:371, 1/S2/393:395 | No text annotation | ||
| IL_3J73_139 | 1/S2/411:413, 1/S2/424:429 | No text annotation | ||
| IL_3J73_140 | 1/S2/437:439, 1/S2/454:456 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_87907.2 | |
| IL_3J73_141 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_3J73_142 | 1/S2/491:495, 1/S2/508:509 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_3J73_143 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_3J73_144 | 1/S2/528:537, 1/S2/546:557 | No text annotation | ||
| IL_3J73_146 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_3J73_147 | 1/S2/665:671, 1/S2/1161:1162 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_3J73_148 | 1/S2/673:680, 1/S2/1025:1032 | No text annotation | ||
| IL_3J73_149 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_68140.4 | |
| IL_3J73_150 | 1/S2/803:807, 1/S2/856:860 | No text annotation | geometric IL_4V88_422 NA | |
| IL_3J73_151 | 1/S2/807:815, 1/S2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_3J73_152 | 1/S2/873:879, 1/S2/907:912 | No text annotation | ||
| IL_3J73_153 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_3J73_154 | 1/S2/924:931, 1/S2/1010:1018 | No text annotation | ||
| IL_3J73_155 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_3J73_156 | 1/S2/938:941, 1/S2/985:1004 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_51479.1 | |
| IL_3J73_157 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_3J73_158 | 1/S2/949:956, 1/S2/967:977 | No text annotation | ||
| IL_3J73_159 | 1/S2/1041:1047, 1/S2/1071:1074 | No text annotation | ||
| IL_3J73_160 | 1/S2/1047:1054, 1/S2/1064:1071 | No text annotation | ||
| IL_3J73_161 | 1/S2/1096:1103, 1/S2/1129:1136 | No text annotation | ||
| IL_3J73_162 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | geometric IL_4V88_443 NA | |
| IL_3J73_163 | 1/S2/1230:1233, 1/S2/1525:1528 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_3J73_164 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_3J73_166 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | geometric IL_4V88_449 NA | |
| IL_3J73_167 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_86012.1 | |
| IL_3J73_168 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_3J73_169 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_3J73_170 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_3J73_171 | 1/S2/1402:1406, 1/S2/1440:1444 | No text annotation | ||
| IL_3J73_172 | 1/S2/1407:1413, 1/S2/1433:1439 | No text annotation | ||
| IL_3J73_173 | 1/S2/1415:1419, 1/S2/1428:1431 | No text annotation | ||
| IL_3J73_174 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_3J73_175 | 1/S2/1559:1563, 1/S2/1572:1576 | No text annotation | ||
| IL_3J73_176 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_3J73_177 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_3J73_178 | 1/S2/1706:1712, 1/S2/1821:1828 | No text annotation | ||
| IL_3J73_179 | 1/S2/1713:1716, 1/S2/1817:1820 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_3J73_181 | 1/S2/1726:1731, 1/S2/1803:1808 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_3J73_185 | 1/S6/10:12, 1/S6/24:25 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_3J73_186 | 1/S6/12:14, 1/S6/22:24 | No text annotation | ||
| IL_3J73_187 | 1/S6/49:51, 1/S6/64:65 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_3J73_188 | 1/S6/51:55, 1/S6/58:64 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J73_002 | Triple non-canonical cWW pairs | ||
| IL_3J73_005 | No text annotation | ||
| IL_3J73_010 | No text annotation | ||
| IL_3J73_021 | Isolated non-canonical cWW pair | ||
| IL_3J73_029 | No text annotation | ||
| IL_3J73_032 | No text annotation | ||
| IL_3J73_034 | No text annotation | ||
| IL_3J73_035 | No text annotation | ||
| IL_3J73_042 | Triple sheared with non-canonical cWW | ||
| IL_3J73_059 | Tandem non-canonical cWW pairs | ||
| IL_3J73_082 | Isolated non-canonical cWW pair | ||
| IL_3J73_086 | Double sheared | ||
| IL_3J73_090 | No text annotation | ||
| IL_3J73_091 | No text annotation | ||
| IL_3J73_107 | No text annotation | ||
| IL_3J73_111 | No text annotation | ||
| IL_3J73_112 | No text annotation | ||
| IL_3J73_117 | No text annotation | ||
| IL_3J73_127 | No text annotation | ||
| IL_3J73_145 | No text annotation | ||
| IL_3J73_165 | No text annotation | ||
| IL_3J73_180 | No text annotation | ||
| IL_3J73_182 | Double sheared with non-canonical cWW | ||
| IL_3J73_183 | No text annotation | ||
| IL_3J73_184 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J73_001 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_8P9A_046 J3_60031.2 | |
| J3_3J73_002 | 1/5/1529:1537, 1/5/1622:1626, 1/5/1636:1645 | No text annotation | ||
| J3_3J73_003 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_3J73_004 | 1/5/1969:1977, 1/5/1989:2001, 1/5/2016:2018 | No text annotation | ||
| J3_3J73_005 | 1/5/2402:2405, 1/5/2785:2792, 1/5/2799:2802 | No text annotation | ||
| J3_3J73_006 | 1/5/2575:2578, 1/5/2583:2589, 1/5/2756:2757 | No text annotation | ||
| J3_3J73_007 | 1/5/3933:3939, 1/5/4074:4078, 1/5/4168:4177 | No text annotation | ||
| J3_3J73_008 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | geometric J3_8CRE_020 J3_28639.1 | |
| J3_3J73_009 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8P9A_068 J3_67856.4 | |
| J3_3J73_010 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_3J73_011 | 1/S2/1091:1096, 1/S2/1136:1140, 1/S2/1147:1158 | No text annotation | ||
| J3_3J73_012 | 1/S2/1218:1223, 1/S2/1643:1651, 1/S2/1673:1680 | No text annotation | ||
| J3_3J73_013 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | geometric J3_8P9A_077 J3_52655.4 | |
| J3_3J73_014 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | ||
| J3_3J73_015 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | geometric J3_8CRE_083 J3_76043.3 |
Problematic loops
No problematic loops
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