HL_3J73_086

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGACCCGGG

Length

11 nucleotides

Bulged bases

3J73|1|S2|A|500, 3J73|1|S2|C|502, 3J73|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_086 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1943

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3J73|1|S2|C|496
3J73|1|S2|C|497
3J73|1|S2|C|498
3J73|1|S2|G|499
3J73|1|S2|A|500
3J73|1|S2|C|501
3J73|1|S2|C|502
3J73|1|S2|C|503
3J73|1|S2|G|504
3J73|1|S2|G|505
3J73|1|S2|G|506

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SY

Ribosomal protein eS24