HL_3J73_099

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC

Length

38 nucleotides

Bulged bases

3J73|1|S2|C|1283, 3J73|1|S2|A|1284, 3J73|1|S2|G|1285, 3J73|1|S2|C|1292, 3J73|1|S2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|S2|G|1280
3J73|1|S2|G|1281
3J73|1|S2|A|1282
3J73|1|S2|C|1283
3J73|1|S2|A|1284
3J73|1|S2|G|1285
3J73|1|S2|G|1286
3J73|1|S2|A|1287
3J73|1|S2|U|1288
3J73|1|S2|U|1289
3J73|1|S2|G|1290
3J73|1|S2|A|1291
3J73|1|S2|C|1292
3J73|1|S2|A|1293
3J73|1|S2|G|1294
3J73|1|S2|A|1295
3J73|1|S2|U|1296
3J73|1|S2|U|1297
3J73|1|S2|G|1298
3J73|1|S2|A|1299
3J73|1|S2|U|1300
3J73|1|S2|A|1301
3J73|1|S2|G|1302
3J73|1|S2|C|1303
3J73|1|S2|U|1304
3J73|1|S2|C|1305
3J73|1|S2|U|1306
3J73|1|S2|U|1307
3J73|1|S2|U|1308
3J73|1|S2|C|1309
3J73|1|S2|U|1310
3J73|1|S2|C|1311
3J73|1|S2|G|1312
3J73|1|S2|A|1313
3J73|1|S2|U|1314
3J73|1|S2|U|1315
3J73|1|S2|C|1316
3J73|1|S2|C|1317

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

Ribosomal protein eS10

Chain SM

Ribosomal protein eS12

Chain SP

Ribosomal protein uS19

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31