HL_3J74_048

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J74_048 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1753

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3J74|1|5|A|3724
3J74|1|5|G|3725
3J74|1|5|A|3726
3J74|1|5|A|3727
3J74|1|5|A|3728
3J74|1|5|U|3729

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain i

Ribosomal protein eL36

Chain o

Ribosomal protein eL42