RNA 3D Hub //

3J74 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J74_0011/5/30:52No text annotation
HL_3J74_0021/5/68:73No text annotation
geometric
HL_5TBW_002
NA
HL_3J74_0031/5/88:96No text annotation
HL_3J74_0041/5/131:137No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_3J74_1091/5/204:211T-loop with 2 stacked bulged bases
geometric
HL_5DH6_002
HL_13999.4
HL_3J74_0061/5/222:226No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_3J74_0071/5/230:238T-loop with unstacked turn
geometric
HL_4V9F_012
HL_27670.5
HL_3J74_0081/5/285:302No text annotation
HL_3J74_0091/5/313:324No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_3J74_0101/5/368:373GNRA
geometric
HL_3NPQ_001
HL_34789.5
HL_3J74_0111/5/393:398GNRA
geometric
HL_6UFH_005
HL_34789.5
HL_3J74_1101/5/996:1047No text annotation
HL_3J74_0121/5/1171:1190No text annotation
HL_3J74_0131/5/1252:1258GNRA
geometric
HL_4LFB_012
HL_34789.5
HL_3J74_0141/5/1317:1326T-loop with 2 stacked bulged bases
geometric
HL_5TBW_014
NA
HL_3J74_0151/5/1364:1373No text annotation
HL_3J74_0161/5/1405:1412No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_3J74_0171/5/1436:1448No text annotation
HL_3J74_0181/5/1479:1486No text annotation
HL_3J74_0191/5/1561:1566UNCG variation
geometric
HL_2CZJ_007
NA
HL_3J74_0201/5/1592:1603No text annotation
HL_3J74_0211/5/1627:1635No text annotation
geometric
HL_5TBW_021
NA
HL_3J74_0221/5/1675:1680Externally structured
geometric
HL_5TBW_022
NA
HL_3J74_0231/5/1763:1769GNRA
geometric
HL_3RG5_007
HL_34789.5
HL_3J74_0241/5/1814:1823No text annotation
HL_3J74_0251/5/1861:1873No text annotation
HL_3J74_0261/5/1886:1893No text annotation
geometric
HL_5TBW_026
NA
HL_3J74_0271/5/1978:1988No text annotation
HL_3J74_0281/5/2006:2013GNRA with tandem sheared
geometric
HL_3HHN_010
HL_98423.4
HL_3J74_0291/5/2130:2244No text annotation
geometric
HL_4O26_001
HL_53014.1
HL_3J74_0301/5/2317:2322GNRA
geometric
HL_3NPQ_001
HL_34789.5
HL_3J74_0311/5/2376:2384T-loop with 2 stacked bulged bases
geometric
HL_7A0S_032
HL_33597.4
HL_3J74_0321/5/2420:2426Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
NA
HL_3J74_0331/5/2458:2463Mini UNCG
geometric
HL_4YAZ_004
HL_90436.4
HL_3J74_0341/5/2487:2491No text annotation
HL_3J74_0351/5/2522:2533No text annotation
HL_3J74_0361/5/2558:2569No text annotation
HL_3J74_0371/5/2578:2583GNRA
geometric
HL_5TBW_036
NA
HL_3J74_0381/5/2622:2634No text annotation
HL_3J74_0391/5/2664:2670Mini UNCG
geometric
HL_4YAZ_004
HL_90436.4
HL_3J74_0401/5/2705:2710No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_3J74_0411/5/2738:2742Mini UNCG
geometric
HL_4L8H_001
HL_90436.4
HL_3J74_0421/5/2792:2799No text annotation
geometric
HL_5TBW_041
NA
HL_3J74_0431/5/2810:2816GNRA
geometric
HL_5TBW_042
NA
HL_3J74_0441/5/2872:2877UNCG
geometric
HL_4PMI_004
HL_61337.5
HL_3J74_1111/5/2910:3584No text annotation
HL_3J74_0451/5/3614:3618No text annotation
geometric
HL_5TBW_045
NA
HL_3J74_0461/5/3639:3649No text annotation
geometric
HL_4WF9_043
HL_87681.2
HL_3J74_0471/5/3666:3676No text annotation
geometric
HL_1HMH_004
NA
HL_3J74_1121/5/3708:3742No text annotation
HL_3J74_0481/5/3724:3729No text annotation
geometric
HL_4WF9_011
HL_75660.9
HL_3J74_0491/5/3757:3767No text annotation
geometric
HL_5TBW_049
NA
HL_3J74_0501/5/3781:3811No text annotation
HL_3J74_0511/5/3873:3882No text annotation
geometric
HL_5TBW_051
NA
HL_3J74_0521/5/3948:4065No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_3J74_0531/5/4102:4107UNCG
geometric
HL_4LFB_031
HL_61337.5
HL_3J74_0541/5/4139:4145No text annotation
HL_3J74_0551/5/4193:4201No text annotation
geometric
HL_5TBW_054
NA
HL_3J74_0561/5/4210:4222No text annotation
geometric
HL_5J7L_187
NA
HL_3J74_0571/5/4250:4258No text annotation
geometric
HL_5TBW_056
NA
HL_3J74_1131/5/4301:4309No text annotation
geometric
HL_8CRE_057
NA
HL_3J74_1141/5/4321:4326GNRA
geometric
HL_7A0S_047
HL_34789.5
HL_3J74_0601/5/4347:4365No text annotation
HL_3J74_0611/5/4412:4430No text annotation
HL_3J74_0621/5/4472:4483No text annotation
HL_3J74_0631/5/4495:4505No text annotation
HL_3J74_0641/5/4540:4545GNRA
geometric
HL_3NPQ_001
HL_34789.5
HL_3J74_0651/5/4603:4608No text annotation
geometric
HL_4WF9_003
HL_75660.9
HL_3J74_0661/5/4644:4653No text annotation
HL_3J74_1151/5/4686:4704No text annotation
HL_3J74_0681/5/4907:4914No text annotation
HL_3J74_0691/5/4972:4986No text annotation
HL_3J74_0701/5/5018:5031No text annotation
HL_3J74_0711/7/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_3J74_0721/7/86:91GNRA
geometric
HL_5TBW_019
NA
HL_3J74_0731/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.2
HL_3J74_0741/8/68:90No text annotation
HL_3J74_0751/8/107:112No text annotation
geometric
HL_8P9A_188
HL_91813.1
HL_3J74_0761/8/121:129No text annotation
HL_3J74_0771/S2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_3J74_0781/S2/69:80No text annotation
HL_3J74_0791/S2/152:166No text annotation
HL_3J74_0801/S2/197:202GNRA
geometric
HL_5J7L_007
NA
HL_3J74_1161/S2/223:298No text annotation
HL_3J74_0811/S2/288:295No text annotation
HL_3J74_0821/S2/322:329No text annotation
HL_3J74_0831/S2/375:389No text annotation
HL_3J74_0841/S2/413:424No text annotation
HL_3J74_0851/S2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_3J74_0861/S2/462:467UNCG
geometric
HL_6QN3_003
HL_61337.5
HL_3J74_0871/S2/495:508No text annotation
HL_3J74_0881/S2/539:544GNRA
geometric
HL_5J7L_007
NA
HL_3J74_0891/S2/566:584No text annotation
HL_3J74_1171/S2/599:637No text annotation
HL_3J74_0901/S2/617:624No text annotation
geometric
HL_6D12_001
HL_89167.3
HL_3J74_0911/S2/698:732No text annotation
HL_3J74_0931/S2/833:841No text annotation
HL_3J74_0941/S2/885:901tRNA D-loop
geometric
HL_6UFM_001
HL_04642.3
HL_3J74_0951/S2/956:967No text annotation
HL_3J74_0961/S2/1054:1064No text annotation
geometric
HL_5J7L_017
NA
HL_3J74_0971/S2/1108:1124No text annotation
HL_3J74_0981/S2/1141:1146GNRA
geometric
HL_6UFH_005
HL_34789.5
HL_3J74_0991/S2/1178:1183GNRA
geometric
HL_6CB3_006
HL_34789.5
HL_3J74_1001/S2/1280:1317No text annotation
HL_3J74_1011/S2/1353:1358GNRA
geometric
HL_5J7L_023
NA
HL_3J74_1181/S2/1415:1431No text annotation
HL_3J74_1021/S2/1419:1428No text annotation
HL_3J74_1031/S2/1460:1466No text annotation
geometric
HL_1F1T_001
NA
HL_3J74_1041/S2/1565:1570GNRA
geometric
HL_4V9F_015
HL_34789.5
HL_3J74_1051/S2/1614:1625No text annotation
geometric
HL_4V88_219
NA
HL_3J74_1061/S2/1656:1668No text annotation
HL_3J74_1191/S2/1761:1771No text annotation
HL_3J74_1081/S2/1847:1852No text annotation
geometric
HL_5NFV_001
HL_69752.4

Problematic loops

#loop idProblemSequence
HL_3J74_005No text annotation
HL_3J74_058No text annotation
HL_3J74_059No text annotation
HL_3J74_067No text annotation
HL_3J74_092No text annotation
HL_3J74_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J74_0011/5/6:7,
1/8/149:151		Single bulged C
geometric
IL_7A0S_032
IL_05642.4
IL_3J74_1781/5/11:14,
1/8/143:145		Isolated non-canonical cWW pair
geometric
IL_7QQP_008
IL_01003.5
IL_3J74_0031/5/26:29,
1/5/53:57		No text annotation
IL_3J74_0041/5/81:88,
1/5/96:102		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_006
NA
IL_3J74_1791/5/117:122,
1/5/147:154		No text annotation
IL_3J74_0061/5/122:128,
1/5/140:147		No text annotation
IL_3J74_0071/5/160:162,
1/5/273:276		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_3J74_0081/5/168:173,
1/5/263:267		No text annotation
IL_3J74_0091/5/180:182,
1/5/255:256		Single stack bend
geometric
IL_7KGA_003
IL_15011.4
IL_3J74_1801/5/184:189,
1/5/252:253		No text annotation
IL_3J74_0111/5/199:201,
1/5/214:215		Single bulged U
geometric
IL_4V9F_029
IL_97561.6
IL_3J74_0121/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_3J74_0131/5/348:350,
1/8/25:26		Single bulged A
geometric
IL_5J7L_246
NA
IL_3J74_0141/5/387:390,
1/5/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_3J74_0151/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_3J74_0161/5/443:446,
1/5/1300:1304		No text annotation
IL_3J74_0171/5/459:460,
1/5/695:697		Single bulged C
geometric
IL_1KUQ_002
IL_05642.4
IL_3J74_1811/5/462:474,
1/5/680:693		No text annotation
IL_3J74_1821/5/482:497,
1/5/656:672		No text annotation
IL_3J74_0181/5/497:499,
1/5/655:656		No text annotation
IL_3J74_0191/5/500:505,
1/5/653:654		Single stack bend
geometric
IL_4V9F_005
IL_15011.4
IL_3J74_0201/5/508:510,
1/5/649:650		No text annotation
IL_3J74_1831/5/512:515,
1/5/646:647		Major groove intercalation
geometric
IL_3MXH_004
IL_71421.4
IL_3J74_0221/5/722:724,
1/5/942:946		No text annotation
IL_3J74_0231/5/726:731,
1/5/938:940		No text annotation
IL_3J74_0241/5/731:735,
1/5/928:938		No text annotation
IL_3J74_0251/5/735:737,
1/5/927:928		Single stack bend
geometric
IL_5TBW_070
NA
IL_3J74_0261/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_3J74_0271/5/745:750,
1/5/912:919		No text annotation
IL_3J74_1841/5/745:756,
1/5/907:919		No text annotation
IL_3J74_0281/5/750:756,
1/5/907:912		No text annotation
IL_3J74_1851/5/989:992,
1/5/1051:1064		No text annotation
IL_3J74_0301/5/1074:1080,
1/5/1220:1236		No text annotation
IL_3J74_0311/5/1081:1082,
1/5/1217:1219		No text annotation
IL_3J74_1861/5/1082:1085,
1/5/1212:1217		No text annotation
IL_3J74_0331/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_7KGA_001
IL_05642.4
IL_3J74_1871/5/1094:1097,
1/5/1198:1202		No text annotation
geometric
IL_1HYS_004
NA
IL_3J74_1881/5/1357:1363,
1/5/1374:1382		No text annotation
IL_3J74_0361/5/1425:1429,
1/5/1455:1460		No text annotation
IL_3J74_0371/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_5J7L_333
NA
IL_3J74_0381/5/1467:1468,
1/5/1496:1498		Single bulged A
geometric
IL_5TBW_024
NA
IL_3J74_1891/5/1470:1478,
1/5/1487:1494		No text annotation
IL_3J74_0391/5/1472:1479,
1/5/1486:1492		No text annotation
IL_3J74_0401/5/1520:1526,
1/5/1648:1657		No text annotation
IL_3J74_0411/5/1550:1551,
1/5/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_28408.3
IL_3J74_1901/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_5J7L_263
NA
IL_3J74_0431/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
geometric
IL_5TBW_031
NA
IL_3J74_0441/5/1590:1592,
1/5/1603:1604		Single bulged U
geometric
IL_5TBW_032
NA
IL_3J74_0451/5/1686:1688,
1/5/1848:1851		No text annotation
IL_3J74_0461/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_3J74_0471/5/1737:1739,
1/5/1789:1792		No text annotation
IL_3J74_1911/5/1737:1745,
1/5/1785:1792		No text annotation
IL_3J74_0481/5/1739:1745,
1/5/1785:1789		No text annotation
geometric
IL_4V9F_035
IL_38603.1
IL_3J74_1921/5/1746:1759,
1/5/1773:1784		No text annotation
IL_3J74_0491/5/1761:1763,
1/5/1769:1771		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.5
IL_3J74_0501/5/1905:1909,
1/5/2067:2071		UAA/GAN
geometric
IL_5TBW_048
NA
IL_3J74_0511/5/1910:1920,
1/5/2063:2066		No text annotation
IL_3J74_1931/5/1910:1922,
1/5/2062:2066		No text annotation
IL_3J74_0521/5/1920:1922,
1/5/2062:2063		No text annotation
IL_3J74_0531/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_3J74_0541/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_3J74_0551/5/1945:1951,
1/5/2032:2037		No text annotation
IL_3J74_0561/5/1957:1967,
1/5/2020:2026		No text annotation
IL_3J74_1941/5/1969:2001,
1/5/2016:2018		No text annotation
IL_3J74_0571/5/2001:2005,
1/5/2014:2016		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_36931.3
IL_3J74_0581/5/2081:2085,
1/5/2272:2275		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.3
IL_3J74_1951/5/2087:2128,
1/5/2246:2270		No text annotation
IL_3J74_1961/5/2298:2301,
1/5/2334:2336		Isolated non-canonical cWW pair
geometric
IL_5UNE_004
IL_01003.5
IL_3J74_0601/5/2302:2310,
1/5/2328:2333		No text annotation
IL_3J74_0611/5/2310:2315,
1/5/2324:2328		No text annotation
IL_3J74_1971/5/2402:2405,
1/5/2785:2802		No text annotation
IL_3J74_0621/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_06671.2
IL_3J74_0631/5/2446:2450,
1/5/2509:2514		UAA/GAN
geometric
IL_5TBW_063
NA
IL_3J74_0641/5/2477:2479,
1/5/2499:2500		Single stack bend
geometric
IL_4WF9_007
IL_15011.4
IL_3J74_0651/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_76400.2
IL_3J74_0661/5/2589:2596,
1/5/2749:2756		No text annotation
IL_3J74_1981/5/2597:2607,
1/5/2732:2748		No text annotation
IL_3J74_0671/5/2613:2615,
1/5/2722:2726		No text annotation
IL_3J74_0681/5/2642:2648,
1/5/2685:2692		No text annotation
IL_3J74_1991/5/2648:2664,
1/5/2670:2685		No text annotation
IL_3J74_0691/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_7D7W_002
IL_28408.3
IL_3J74_0701/5/2655:2664,
1/5/2670:2679		No text annotation
IL_3J74_0711/5/2702:2705,
1/5/2710:2714		No text annotation
IL_3J74_2001/5/2832:2844,
1/5/3844:3853		No text annotation
IL_3J74_0721/5/2844:2846,
1/5/3842:3844		Isolated tWW turn
geometric
IL_7A0S_060
IL_10432.2
IL_3J74_0731/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_3J74_2011/5/2847:2855,
1/5/3837:3841		No text annotation
geometric
IL_5J7L_386
NA
IL_3J74_0741/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_4V9F_062
IL_28217.2
IL_3J74_0751/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_3J74_0761/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_01003.5
IL_3J74_0771/5/2893:2897,
1/5/3602:3608		No text annotation
IL_3J74_0781/5/2901:2905,
1/5/3589:3598		No text annotation
IL_3J74_0791/5/3632:3633,
1/5/3827:3829		Single bulged A
geometric
IL_4V9F_064
IL_14190.3
IL_3J74_0801/5/3660:3665,
1/5/3677:3684		Kink-turn related
geometric
IL_5TBW_083
NA
IL_3J74_0811/5/3700:3704,
1/5/3748:3750		No text annotation
IL_3J74_2021/5/3704:3705,
1/5/3745:3748		Major groove intercalation
geometric
IL_8CRE_090
NA
IL_3J74_0831/5/3895:3902,
1/5/4558:4565		No text annotation
IL_3J74_0841/5/3912:3915,
1/5/4388:4390		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_71625.4
IL_3J74_0851/5/3916:3917,
1/5/4384:4387		Minor groove platform
geometric
IL_7RQB_081
NA
IL_3J74_2031/5/3927:3929,
1/5/4181:4184		Isolated tHS basepair with bulges
geometric
IL_4WF9_082
IL_87316.3
IL_3J74_0871/5/4078:4088,
1/5/4161:4168		No text annotation
IL_3J74_0881/5/4095:4099,
1/5/4110:4113		No text annotation
IL_3J74_0891/5/4191:4192,
1/5/4202:4204		Single bulged A
geometric
IL_4V9F_079
IL_14190.3
IL_3J74_0901/5/4238:4245,
1/5/4263:4286		No text annotation
IL_3J74_0911/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_3J74_0921/5/4294:4299,
1/5/4311:4316		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_0931/5/4403:4407,
1/5/4435:4440		No text annotation
IL_3J74_0941/5/4453:4458,
1/5/4520:4528		No text annotation
IL_3J74_2041/5/4453:4459,
1/5/4517:4528		No text annotation
IL_3J74_0951/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_3J74_0961/5/4536:4540,
1/5/4545:4550		Other IL
geometric
IL_4WF9_084
NA
IL_3J74_0971/5/4577:4582,
1/5/4721:4726		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_0981/5/4582:4585,
1/5/4717:4721		Double sheared
geometric
IL_5TBW_114
NA
IL_3J74_0991/5/4590:4594,
1/5/4616:4620		Partly complementary
geometric
IL_8D29_010
IL_71154.4
IL_3J74_1001/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_3J74_1011/5/4624:4629,
1/5/4669:4673		No text annotation
geometric
IL_5TBW_062
NA
IL_3J74_2051/5/4632:4637,
1/5/4662:4666		No text annotation
geometric
IL_8P9A_346
IL_98200.2
IL_3J74_1031/5/4637:4641,
1/5/4658:4662		No text annotation
geometric
IL_5TBW_121
NA
IL_3J74_2061/5/4637:4642,
1/5/4655:4662		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_1041/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
geometric
IL_1KXK_003
NA
IL_3J74_1051/5/4681:4685,
1/5/4705:4709		UAA/GAN
geometric
IL_7RQB_055
NA
IL_3J74_2071/5/4740:4747,
1/5/4953:4959		No text annotation
IL_3J74_2081/5/4755:4765,
1/5/4869:4878		No text annotation
IL_3J74_1081/5/4768:4772,
1/5/4863:4866		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_71194.3
IL_3J74_1091/5/4891:4896,
1/5/4924:4928		No text annotation
IL_3J74_1101/5/4899:4901,
1/5/4920:4921		No text annotation
IL_3J74_2091/5/4996:5017,
1/5/5032:5055		No text annotation
IL_3J74_1111/7/15:19,
1/7/59:64		No text annotation
geometric
IL_4V88_422
NA
IL_3J74_2101/7/21:27,
1/7/52:57		No text annotation
geometric
IL_8OI5_135
IL_41504.1
IL_3J74_1131/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
NA
IL_3J74_1141/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_3J74_1151/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_62167.4
IL_3J74_1161/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_01003.5
IL_3J74_1171/7/82:86,
1/7/91:94		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_3J74_1181/S2/23:29,
1/S2/645:651		No text annotation
IL_3J74_1191/S2/34:36,
1/S2/519:521		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_3J74_1201/S2/37:40,
1/S2/514:518		No text annotation
IL_3J74_1211/S2/41:47,
1/S2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_3J74_1221/S2/56:62,
1/S2/86:89		No text annotation
IL_3J74_1231/S2/62:68,
1/S2/81:86		No text annotation
IL_3J74_1241/S2/108:110,
1/S2/351:353		Isolated non-canonical cWW pair
geometric
IL_1T0E_002
IL_71625.4
IL_3J74_2111/S2/108:121,
1/S2/343:353		No text annotation
IL_3J74_1251/S2/110:116,
1/S2/347:351		Partly complementary
geometric
IL_7VYX_008
IL_71154.4
IL_3J74_1261/S2/116:122,
1/S2/342:347		No text annotation
IL_3J74_1271/S2/145:151,
1/S2/167:174		No text annotation
geometric
IL_8CRE_400
IL_24485.2
IL_3J74_1281/S2/188:192,
1/S2/207:211		Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_87767.3
IL_3J74_1291/S2/223:288,
1/S2/295:298		No text annotation
IL_3J74_1301/S2/317:320,
1/S2/331:333		No text annotation
geometric
IL_4V88_400
NA
IL_3J74_1311/S2/358:364,
1/S2/396:404		No text annotation
IL_3J74_2121/S2/366:371,
1/S2/393:394		No text annotation
geometric
IL_8P9A_392
IL_01372.2
IL_3J74_1331/S2/411:413,
1/S2/424:429		No text annotation
IL_3J74_2131/S2/437:439,
1/S2/454:456		Isolated cWH basepair
geometric
IL_5F5F_001
IL_10892.3
IL_3J74_1351/S2/487:489,
1/S2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.6
IL_3J74_1361/S2/491:495,
1/S2/508:509		C-loop
geometric
IL_4LFB_015
IL_26900.2
IL_3J74_2141/S2/528:537,
1/S2/546:557		No text annotation
IL_3J74_2151/S2/599:617,
1/S2/624:637		No text annotation
IL_3J74_1381/S2/663:665,
1/S2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.5
IL_3J74_1391/S2/665:671,
1/S2/1161:1162		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.4
IL_3J74_1401/S2/673:682,
1/S2/1023:1032		No text annotation
IL_3J74_1411/S2/802:803,
1/S2/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_1S03_003
IL_73108.3
IL_3J74_1421/S2/803:807,
1/S2/856:860		No text annotation
geometric
IL_4V88_422
NA
IL_3J74_1431/S2/807:815,
1/S2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_3J74_2161/S2/807:831,
1/S2/843:856		No text annotation
IL_3J74_1441/S2/873:879,
1/S2/907:912		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_2171/S2/873:881,
1/S2/905:912		No text annotation
IL_3J74_1451/S2/922:923,
1/S2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_3J74_2181/S2/924:931,
1/S2/1010:1018		No text annotation
IL_3J74_1471/S2/931:935,
1/S2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_3J74_1481/S2/938:941,
1/S2/985:1004		Tandem non-canonical cWW pairs
geometric
IL_4EYA_008
IL_37443.1
IL_3J74_1491/S2/942:945,
1/S2/981:984		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_3J74_2191/S2/946:956,
1/S2/967:980		No text annotation
IL_3J74_1501/S2/949:956,
1/S2/967:977		No text annotation
IL_3J74_1511/S2/1041:1047,
1/S2/1071:1074		No text annotation
IL_3J74_1521/S2/1047:1054,
1/S2/1064:1071		No text annotation
IL_3J74_1531/S2/1096:1103,
1/S2/1129:1136		No text annotation
IL_3J74_2201/S2/1168:1178,
1/S2/1183:1191		No text annotation
IL_3J74_1541/S2/1214:1217,
1/S2/1681:1685		C-loop
geometric
IL_1KOG_007
IL_63596.13
IL_3J74_1551/S2/1230:1235,
1/S2/1523:1528		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_1561/S2/1235:1236,
1/S2/1521:1523		Minor groove platform
geometric
IL_4V88_445
NA
IL_3J74_2211/S2/1237:1266,
1/S2/1516:1520		No text annotation
IL_3J74_1581/S2/1325:1327,
1/S2/1502:1503		Single bulged U
geometric
IL_3MEI_001
IL_97561.6
IL_3J74_1591/S2/1329:1335,
1/S2/1492:1500		No text annotation
geometric
IL_8P9A_439
IL_99893.2
IL_3J74_1601/S2/1337:1338,
1/S2/1488:1490		Single bulged A
geometric
IL_4V88_452
NA
IL_3J74_1611/S2/1347:1349,
1/S2/1380:1382		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_3J74_1621/S2/1350:1351,
1/S2/1360:1379		No text annotation
IL_3J74_1631/S2/1395:1399,
1/S2/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_3J74_1641/S2/1402:1406,
1/S2/1440:1444		No text annotation
IL_3J74_1651/S2/1407:1413,
1/S2/1433:1439		No text annotation
IL_3J74_1661/S2/1415:1419,
1/S2/1428:1431		No text annotation
IL_3J74_2221/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_3J74_1671/S2/1550:1558,
1/S2/1577:1582		No text annotation
IL_3J74_1681/S2/1559:1563,
1/S2/1572:1576		No text annotation
IL_3J74_1691/S2/1700:1702,
1/S2/1833:1836		No text annotation
geometric
IL_4V88_463
NA
IL_3J74_1701/S2/1702:1705,
1/S2/1829:1833		No text annotation
geometric
IL_8CRE_467
IL_25873.3
IL_3J74_1711/S2/1706:1712,
1/S2/1821:1828		No text annotation
IL_3J74_1721/S2/1713:1716,
1/S2/1817:1820		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_3J74_2231/S2/1717:1723,
1/S2/1811:1816		No text annotation
IL_3J74_1741/S2/1726:1731,
1/S2/1803:1808		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.3
IL_3J74_2241/S2/1733:1736,
1/S2/1798:1801		Double sheared
geometric
IL_8CRE_474
IL_58355.3
IL_3J74_2251/S2/1739:1746,
1/S2/1788:1795		No text annotation
IL_3J74_2261/S2/1748:1752,
1/S2/1780:1786		No text annotation

Problematic loops

#loop idProblemSequence
IL_3J74_002Triple non-canonical cWW pairs
IL_3J74_005No text annotation
IL_3J74_010No text annotation
IL_3J74_021Isolated non-canonical cWW pair
IL_3J74_029No text annotation
IL_3J74_032No text annotation
IL_3J74_034No text annotation
IL_3J74_035No text annotation
IL_3J74_042Triple sheared with non-canonical cWW
IL_3J74_059Tandem non-canonical cWW pairs
IL_3J74_082Isolated non-canonical cWW pair
IL_3J74_086Double sheared
IL_3J74_102No text annotation
IL_3J74_106No text annotation
IL_3J74_107No text annotation
IL_3J74_112No text annotation
IL_3J74_132No text annotation
IL_3J74_134Tandem non-canonical cWW pairs
IL_3J74_137No text annotation
IL_3J74_146No text annotation
IL_3J74_157No text annotation
IL_3J74_173No text annotation
IL_3J74_175Double sheared with non-canonical cWW
IL_3J74_176No text annotation
IL_3J74_177No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J74_0151/5/194:199,
1/5/215:228,
1/5/240:247		No text annotation
J3_3J74_0161/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
geometric
J3_8CRE_004
NA
J3_3J74_0011/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
geometric
J3_8P9A_046
J3_68715.2
J3_3J74_0171/5/380:387,
1/5/414:421,
1/8/13:20		No text annotation
J3_3J74_0181/5/447:459,
1/5/697:704,
1/5/1293:1299		No text annotation
J3_3J74_0191/5/706:713,
1/5/955:978,
1/5/1276:1291		No text annotation
J3_3J74_0021/5/1529:1537,
1/5/1622:1626,
1/5/1636:1645		No text annotation
J3_3J74_0201/5/1540:1548,
1/5/1580:1584,
1/5/1609:1619		No text annotation
J3_3J74_0031/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
geometric
J3_8P9A_050
J3_21998.1
J3_3J74_0041/5/1969:1977,
1/5/1989:2001,
1/5/2016:2018		No text annotation
J3_3J74_0051/5/2402:2405,
1/5/2785:2792,
1/5/2799:2802		No text annotation
J3_3J74_0211/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
geometric
J3_8P9A_055
J3_94309.2
J3_3J74_0221/5/2450:2457,
1/5/2464:2476,
1/5/2501:2509		No text annotation
J3_3J74_0231/5/2549:2556,
1/5/2571:2575,
1/5/2757:2770		No text annotation
J3_3J74_0061/5/2575:2578,
1/5/2583:2589,
1/5/2756:2757		No text annotation
J3_3J74_0071/5/3933:3939,
1/5/4074:4078,
1/5/4168:4177		No text annotation
J3_3J74_0241/5/3934:3939,
1/5/4074:4088,
1/5/4161:4176		No text annotation
J3_3J74_0081/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
geometric
J3_8CRE_020
NA
J3_3J74_0251/5/4463:4470,
1/5/4485:4493,
1/5/4507:4513		No text annotation
J3_3J74_0261/5/4748:4754,
1/5/4879:4888,
1/5/4931:4952		No text annotation
J3_3J74_0271/5/4969:4972,
1/5/4986:4994,
1/5/5057:5064		No text annotation
J3_3J74_0281/7/4:14,
1/7/65:66,
1/7/109:115		No text annotation
J3_3J74_0091/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
geometric
J3_8P9A_068
J3_58657.2
J3_3J74_0101/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_3J74_0291/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_3J74_0111/S2/1091:1096,
1/S2/1136:1140,
1/S2/1147:1158		No text annotation
J3_3J74_0301/S2/1091:1103,
1/S2/1129:1140,
1/S2/1147:1158		No text annotation
J3_3J74_0121/S2/1218:1223,
1/S2/1643:1651,
1/S2/1673:1680		No text annotation
J3_3J74_0131/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641		No text annotation
geometric
J3_8P9A_077
J3_44359.2
J3_3J74_0311/S2/1270:1277,
1/S2/1320:1324,
1/S2/1504:1512		No text annotation
J3_3J74_0141/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
J3_3J74_0321/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479		No text annotation
J3_3J74_0331/S2/1532:1540,
1/S2/1593:1610,
1/S2/1629:1638		No text annotation
J4_3J74_0011/5/980:984,
1/5/1069:1079,
1/5/1221:1248,
1/5/1262:1274		No text annotation
J4_3J74_0021/5/2406:2410,
1/5/2434:2439,
1/5/2538:2541,
1/5/2775:2784		No text annotation
J4_3J74_0031/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_3J74_0041/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J4_3J74_0051/S2/49:62,
1/S2/86:96,
1/S2/434:436,
1/S2/457:477		No text annotation
J4_3J74_0061/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
J4_3J74_0071/S2/671:680,
1/S2/1025:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
J5_3J74_0011/5/111:116,
1/5/155:160,
1/5/276:283,
1/5/304:310,
1/5/327:330		No text annotation
J5_3J74_0021/5/1333:1340,
1/5/1516:1519,
1/5/1658:1662,
1/5/2287:2295,
1/5/2339:2353		No text annotation
J5_3J74_0031/5/1352:1355,
1/5/1384:1399,
1/5/1418:1421,
1/5/1464:1468,
1/5/1496:1504		No text annotation
J5_3J74_0041/5/2855:2863,
1/5/2887:2891,
1/5/3610:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
J5_3J74_0051/5/3903:3911,
1/5/4391:4407,
1/5/4435:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_3J74_0061/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:596,
1/S2/640:644		No text annotation
J5_3J74_0071/S2/123:151,
1/S2/167:192,
1/S2/207:223,
1/S2/298:315,
1/S2/335:341		No text annotation
J5_3J74_0081/S2/685:696,
1/S2/734:744,
1/S2/797:800,
1/S2/865:873,
1/S2/912:917		No text annotation
J6_3J74_0011/5/3634:3638,
1/5/3650:3658,
1/5/3686:3698,
1/5/3752:3756,
1/5/3768:3781,
1/5/3811:3826		No text annotation
J7_3J74_0011/5/1665:1674,
1/5/1681:1688,
1/5/1848:1860,
1/5/1874:1885,
1/5/1894:1901,
1/5/2075:2081,
1/5/2275:2284		No text annotation
J8_3J74_0011/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4238,
1/5/4286:4291,
1/5/4318:4319,
1/5/4328:4346,
1/5/4366:4381		No text annotation
J8_3J74_0021/5/3920:3923,
1/5/4188:4192,
1/5/4202:4205,
1/5/4227:4245,
1/5/4263:4291,
1/5/4318:4319,
1/5/4328:4346,
1/5/4366:4381		No text annotation
J10_3J74_0011/5/16:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:342,
1/8/32:45,
1/8/58:66,
1/8/92:106,
1/8/113:120,
1/8/130:141		No text annotation

Problematic loops

No problematic loops


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