HL_3J74_100

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC

Length

38 nucleotides

Bulged bases

3J74|1|S2|C|1283, 3J74|1|S2|A|1284, 3J74|1|S2|G|1285, 3J74|1|S2|C|1292, 3J74|1|S2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|S2|G|1280
3J74|1|S2|G|1281
3J74|1|S2|A|1282
3J74|1|S2|C|1283
3J74|1|S2|A|1284
3J74|1|S2|G|1285
3J74|1|S2|G|1286
3J74|1|S2|A|1287
3J74|1|S2|U|1288
3J74|1|S2|U|1289
3J74|1|S2|G|1290
3J74|1|S2|A|1291
3J74|1|S2|C|1292
3J74|1|S2|A|1293
3J74|1|S2|G|1294
3J74|1|S2|A|1295
3J74|1|S2|U|1296
3J74|1|S2|U|1297
3J74|1|S2|G|1298
3J74|1|S2|A|1299
3J74|1|S2|U|1300
3J74|1|S2|A|1301
3J74|1|S2|G|1302
3J74|1|S2|C|1303
3J74|1|S2|U|1304
3J74|1|S2|C|1305
3J74|1|S2|U|1306
3J74|1|S2|U|1307
3J74|1|S2|U|1308
3J74|1|S2|C|1309
3J74|1|S2|U|1310
3J74|1|S2|C|1311
3J74|1|S2|G|1312
3J74|1|S2|A|1313
3J74|1|S2|U|1314
3J74|1|S2|U|1315
3J74|1|S2|C|1316
3J74|1|S2|C|1317

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

Ribosomal protein eS10

Chain SM

Ribosomal protein eS12

Chain SP

Ribosomal protein uS19

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31