HL_3J74_112

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCG

Length

35 nucleotides

Bulged bases

3J74|1|5|U|3709, 3J74|1|5|A|3712, 3J74|1|5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|5|C|3708
3J74|1|5|U|3709
3J74|1|5|G|3710
3J74|1|5|A|3711
3J74|1|5|A|3712
3J74|1|5|U|3713
3J74|1|5|G|3714
3J74|1|5|U|3715
3J74|1|5|C|3716
3J74|1|5|A|3717
3J74|1|5|A|3718
3J74|1|5|A|3719
3J74|1|5|G|3720
3J74|1|5|U|3721
3J74|1|5|G|3722
3J74|1|5|A|3723
3J74|1|5|A|3724
3J74|1|5|G|3725
3J74|1|5|A|3726
3J74|1|5|A|3727
3J74|1|5|A|3728
3J74|1|5|U|3729
3J74|1|5|U|3730
3J74|1|5|C|3731
3J74|1|5|A|3732
3J74|1|5|A|3733
3J74|1|5|U|3734
3J74|1|5|G|3735
3J74|1|5|A|3736
3J74|1|5|A|3737
3J74|1|5|G|3738
3J74|1|5|C|3739
3J74|1|5|G|3740
3J74|1|5|C|3741
3J74|1|5|G|3742

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain i

Ribosomal protein eL36

Chain o

Ribosomal protein eL42