HL_3J77_014
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J77_014 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.2142
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J77|1|1S|A|520
3J77|1|1S|A|521
3J77|1|1S|U|522
3J77|1|1S|G|523
3J77|1|1S|U|524
3J77|1|1S|A|525
3J77|1|1S|A|526
3J77|1|1S|A|527
3J77|1|1S|U|528
3J77|1|1S|A|529
3J77|1|1S|C|530
3J77|1|1S|C|531
3J77|1|1S|U|532
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 24
- 40S ribosomal protein S24
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
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