Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_3J77_001No text annotation
HL_3J77_002No text annotation
HL_3J77_003GNRA related
HL_3J77_004No text annotation
HL_3J77_005No text annotation
HL_3J77_006T-loop with 1 bulged base
HL_3J77_007Mini UNCG
HL_3J77_008GNRA related
HL_3J77_009No text annotation
HL_3J77_010No text annotation
HL_3J77_011UNCG
HL_3J77_012No text annotation
HL_3J77_013No text annotation
HL_3J77_014No text annotation
HL_3J77_015GNRA variation
HL_3J77_016No text annotation
HL_3J77_017No text annotation
HL_3J77_117No text annotation
HL_3J77_018No text annotation
HL_3J77_019Pseudoknot geometry
HL_3J77_020No text annotation
HL_3J77_021GNRA
HL_3J77_022No text annotation
HL_3J77_023No text annotation
HL_3J77_024GNRA
HL_3J77_025GNRA
HL_3J77_026No text annotation
HL_3J77_027Anticodon loop related
HL_3J77_028GNRA
HL_3J77_029No text annotation
HL_3J77_030No text annotation
HL_3J77_031No text annotation
HL_3J77_032GNRA
HL_3J77_033No text annotation
HL_3J77_034No text annotation
HL_3J77_035No text annotation
HL_3J77_036GNRA variation
HL_3J77_037No text annotation
HL_3J77_038No text annotation
HL_3J77_039No text annotation
HL_3J77_040No text annotation
HL_3J77_041T-loop with 2 stacked bulged bases
HL_3J77_042No text annotation
HL_3J77_043T-loop with unstacked turn
HL_3J77_044No text annotation
HL_3J77_045Pseudoknot geometry
HL_3J77_046GNRA
HL_3J77_047GNRA
HL_3J77_118No text annotation
HL_3J77_048No text annotation
HL_3J77_049GNRA
HL_3J77_050T-loop with 2 stacked bulged bases
HL_3J77_051No text annotation
HL_3J77_119No text annotation
HL_3J77_052GNRA
HL_3J77_053GNRA
HL_3J77_054No text annotation
HL_3J77_055GNRA
HL_3J77_056No text annotation
HL_3J77_057No text annotation
HL_3J77_058Externally structured
HL_3J77_059GNRA
HL_3J77_060T-loop related
HL_3J77_061GNRA
HL_3J77_062No text annotation
HL_3J77_063No text annotation
HL_3J77_064GNRA wlth tandem sheared
HL_3J77_065No text annotation
HL_3J77_066GNRA
HL_3J77_067T-loop with 2 stacked bulged bases
HL_3J77_068Pseudoknot geometry with 3' bulge
HL_3J77_069GNRA variation
HL_3J77_070No text annotation
HL_3J77_071No text annotation
HL_3J77_072GNRA
HL_3J77_073No text annotation
HL_3J77_074No text annotation
HL_3J77_075No text annotation
HL_3J77_076Mini UNCG
HL_3J77_077No text annotation
HL_3J77_078GNRA
HL_3J77_079UNCG
HL_3J77_080No text annotation
HL_3J77_081No text annotation
HL_3J77_082No text annotation
HL_3J77_083GNRA
HL_3J77_084GNRA
HL_3J77_085No text annotation
HL_3J77_086No text annotation
HL_3J77_087No text annotation
HL_3J77_120No text annotation
HL_3J77_123No text annotation
HL_3J77_088No text annotation
HL_3J77_089No text annotation
HL_3J77_090Externally structured
HL_3J77_091No text annotation
HL_3J77_092No text annotation
HL_3J77_093No text annotation
HL_3J77_094Pseudoknot geometry
HL_3J77_095No text annotation
HL_3J77_121No text annotation
HL_3J77_096GNRA
HL_3J77_097Pseudoknot geometry
HL_3J77_098No text annotation
HL_3J77_099No text annotation
HL_3J77_100No text annotation
HL_3J77_101GNRA
HL_3J77_102GNRA
HL_3J77_103Ribsomal LSU H95
HL_3J77_104No text annotation
HL_3J77_105No text annotation
HL_3J77_106No text annotation
HL_3J77_107No text annotation
HL_3J77_108Mini UNCG
HL_3J77_109No text annotation
HL_3J77_110GNRA
HL_3J77_122Pseudoknot with intercalation
HL_3J77_111No text annotation
HL_3J77_112No text annotation
HL_3J77_113No text annotation
HL_3J77_114tRNA D-loop
HL_3J77_115tRNA anticodon loop
HL_3J77_116T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J77_1761/2S/2277:2288,
1/2S/2304:2307
No text annotation
homologous
IL_8C3A_095
NA
IL_3J77_1861/2S/2520:2526,
1/2S/2584:2587
No text annotation
homologous
IL_5TBW_096
NA

Problematic loops

#loop idProblemSequence
IL_3J77_001Single bulged C
IL_3J77_002Isolated non-canonical cWW pair
IL_3J77_003Triple sheared related
IL_3J77_004No text annotation
IL_3J77_005Minor groove platform
IL_3J77_006No text annotation
IL_3J77_007No text annotation
IL_3J77_236No text annotation
IL_3J77_008Tandem non-canonical cWW pairs
IL_3J77_009Multiple bulged bases
IL_3J77_010No text annotation
IL_3J77_011tWH-tWH-tHW-tHW
IL_3J77_237tWH-tWH-tHW-tHW
IL_3J77_012Isolated cWH basepair
IL_3J77_013Double sheared
IL_3J77_014Major groove platform with extra cWW
IL_3J77_015Isolated non-canonical cWW pair
IL_3J77_016Single bulged A
IL_3J77_238No text annotation
IL_3J77_017No text annotation
IL_3J77_018Isolated cWS basepair
IL_3J77_263Single bulged U
IL_3J77_019Kink-turn with non-sequential stacking
IL_3J77_020No text annotation
IL_3J77_021No text annotation
IL_3J77_022Isolated cWH basepair
IL_3J77_023Isolated near basepair
IL_3J77_024Single bulged U
IL_3J77_025C-loop
IL_3J77_026Single bulged G
IL_3J77_239No text annotation
IL_3J77_027No text annotation
IL_3J77_028Minor groove platform with extra cWW
IL_3J77_240Minor groove platform
IL_3J77_029Minor groove platform
IL_3J77_030SSU/LSU pseudoknot
IL_3J77_031Single bulged U
IL_3J77_032Kink-turn related
IL_3J77_241No text annotation
IL_3J77_033Isolated non-canonical cWW pair
IL_3J77_034tSH-tHW-tHS
IL_3J77_035Isolated non-canonical cWW pair
IL_3J77_242No text annotation
IL_3J77_036No text annotation
IL_3J77_037Major groove minor groove platform; mini C-loop
IL_3J77_038Isolated non-canonical cWW pair
IL_3J77_039No text annotation
IL_3J77_040No text annotation
IL_3J77_041Major groove platform; stack outside cWW
IL_3J77_243Isolated non-canonical cWW pair
IL_3J77_042Single bulged U
IL_3J77_043Isolated non-canonical cWW pair
IL_3J77_044Tandem non-canonical cWW pairs
IL_3J77_045Isolated non-canonical cWW pair
IL_3J77_046Isolated non-canonical cWW pair
IL_3J77_047Kink-turn
IL_3J77_048Other IL
IL_3J77_049tSH-tHW-tHS
IL_3J77_050No text annotation
IL_3J77_244Tandem non-canonical cWW pairs
IL_3J77_051No text annotation
IL_3J77_052Single bulged U
IL_3J77_0538x6 Sarcin-Ricin with inserted Y; G-bulge
IL_3J77_054Single bulged A
IL_3J77_055Other IL
IL_3J77_245Single bulged G
IL_3J77_056No text annotation
IL_3J77_057Isolated non-canonical cWW pair
IL_3J77_058Minor groove platform
IL_3J77_059Isolated non-canonical cWW pair
IL_3J77_060No text annotation
IL_3J77_246No text annotation
IL_3J77_247No text annotation
IL_3J77_061No text annotation
IL_3J77_248No text annotation
IL_3J77_062No text annotation
IL_3J77_063Single bulged U
IL_3J77_064No text annotation
IL_3J77_249Isolated cWS basepair
IL_3J77_250No text annotation
IL_3J77_251No text annotation
IL_3J77_065Minor groove platform related
IL_3J77_066Single bulged A
IL_3J77_067Isolated cWH basepair
IL_3J77_068Minor groove platform
IL_3J77_069Isolated non-canonical cWW pair
IL_3J77_070Minor groove platform
IL_3J77_071No text annotation
IL_3J77_072Major groove platform; stack outside cWW
IL_3J77_252No text annotation
IL_3J77_073No text annotation
IL_3J77_074180 degree turn
IL_3J77_075Tandem non-canonical cWW pairs
IL_3J77_076No text annotation
IL_3J77_077No text annotation
IL_3J77_078No text annotation
IL_3J77_079Isolated non-canonical cWW pair
IL_3J77_080No text annotation
IL_3J77_081Isolated non-canonical cWW pair
IL_3J77_082Double sheared
IL_3J77_083Single bulged U
IL_3J77_084Isolated non-canonical cWW pair
IL_3J77_085Double sheared
IL_3J77_086Isolated non-canonical cWW pair
IL_3J77_087Tandem non-canonical cWW pairs
IL_3J77_088Triple sheared
IL_3J77_089Single bulged C
IL_3J77_090Tandem non-canonical cWW pairs
IL_3J77_264No text annotation
IL_3J77_091No text annotation
IL_3J77_092tSH-tHW-tHH-tHS
IL_3J77_0938x7 Sarcin-Ricin; G-bulge
IL_3J77_094No text annotation
IL_3J77_095Isolated non-canonical cWW pair
IL_3J77_096Single stack bend
IL_3J77_097No text annotation
IL_3J77_253No text annotation
IL_3J77_265No text annotation
IL_3J77_098Major groove platform with extra pair
IL_3J77_099Single bulged U
IL_3J77_100Single bulged A
IL_3J77_101No text annotation
IL_3J77_102Triple sheared with non-canonical cWW
IL_3J77_103Isolated non-canonical cWW pair
IL_3J77_104No text annotation
IL_3J77_105Single bulged A
IL_3J77_106No text annotation
IL_3J77_107No text annotation
IL_3J77_108Isolated non-canonical cWW pair
IL_3J77_109No text annotation
IL_3J77_110UAA/GAN variation
IL_3J77_111Single bulged A
IL_3J77_112Single bulged U
IL_3J77_113No text annotation
IL_3J77_114Isolated non-canonical cWW pair
IL_3J77_115tHW-tHW cross-strand stack
IL_3J77_116Single bulged G
IL_3J77_117Triple sheared
IL_3J77_118Major groove platform with extra cWW
IL_3J77_119Single bulged U
IL_3J77_120No text annotation
IL_3J77_121Isolated non-canonical cWW pair
IL_3J77_122No text annotation
IL_3J77_123180 degree turn
IL_3J77_124Single bulged G
IL_3J77_125No text annotation
IL_3J77_126Minor groove platform
IL_3J77_127C-loop
IL_3J77_128Tandem non-canonical cWW pairs
IL_3J77_129Isolated non-canonical cWW pair
IL_3J77_130No text annotation
IL_3J77_131Isolated non-canonical cWW pair
IL_3J77_132Single bulged G
IL_3J77_133Isolated non-canonical cWW pair
IL_3J77_134UAA/GAN
IL_3J77_135SSU/LSU pseudoknot
IL_3J77_136Single bulged U
IL_3J77_137No text annotation
IL_3J77_138No text annotation
IL_3J77_139Single bulged U
IL_3J77_140Kink-turn
IL_3J77_141No text annotation
IL_3J77_142Major groove platform with extra cWW
IL_3J77_143Isolated cWS basepair
IL_3J77_254No text annotation
IL_3J77_144Single bulged A
IL_3J77_145Kink-turn
IL_3J77_146Single bulged A
IL_3J77_1479x8 Sarcin-Ricin; G-bulge
IL_3J77_148No text annotation
IL_3J77_255C-loop
IL_3J77_149UAA/GAN
IL_3J77_150No text annotation
IL_3J77_256Minor groove platform
IL_3J77_257No text annotation
IL_3J77_151No text annotation
IL_3J77_266No text annotation
IL_3J77_258No text annotation
IL_3J77_152Multiple bulged bases with near cWW
IL_3J77_153No text annotation
IL_3J77_154Triple sheared
IL_3J77_155Isolated non-canonical cWW pair
IL_3J77_156Single bulged C
IL_3J77_157Single stack bend
IL_3J77_158No text annotation
IL_3J77_159No text annotation
IL_3J77_160No text annotation
IL_3J77_161No text annotation
IL_3J77_162No text annotation
IL_3J77_163Major groove platform; stack outside cWW
IL_3J77_259No text annotation
IL_3J77_164No text annotation
IL_3J77_165No text annotation
IL_3J77_166Isolated non-canonical cWW pair
IL_3J77_167No text annotation
IL_3J77_168Single bulged A
IL_3J77_169Kink-turn related
IL_3J77_170Major groove intercalation
IL_3J77_171Multiple bulged bases
IL_3J77_172Single bulged U
IL_3J77_260No text annotation
IL_3J77_173Major groove platform with extra pair
IL_3J77_174No text annotation
IL_3J77_175Bulged stacked bases
IL_3J77_177No text annotation
IL_3J77_178No text annotation
IL_3J77_179Single bulged U
IL_3J77_180Minor groove platform
IL_3J77_181No text annotation
IL_3J77_261No text annotation
IL_3J77_182No text annotation
IL_3J77_183No text annotation
IL_3J77_267No text annotation
IL_3J77_184Single stack bend
IL_3J77_185No text annotation
IL_3J77_187Single bulged A
IL_3J77_188Isolated tHS basepair with bulges
IL_3J77_189Tandem non-canonical cWW pairs
IL_3J77_190Single stack bend
IL_3J77_191Major groove platform
IL_3J77_192Isolated non-canonical cWW pair
IL_3J77_193Major groove platform
IL_3J77_194Major groove minor groove platform with extra cWW
IL_3J77_195No text annotation
IL_3J77_196Major groove platform
IL_3J77_197Isolated non-canonical cWW with bulges
IL_3J77_198No text annotation
IL_3J77_199Isolated non-canonical cWW pair
IL_3J77_200Major groove platform with intercalation
IL_3J77_201Isolated non-canonical cWW pair
IL_3J77_202Single bulged A
IL_3J77_203Double sheared
IL_3J77_204Isolated non-canonical cWW pair
IL_3J77_2058x7 Sarcin-Ricin; G-bulge
IL_3J77_206Major groove minor groove platform with tHH
IL_3J77_207UAA/GAN related
IL_3J77_208No text annotation
IL_3J77_209UAA/GAN
IL_3J77_210No text annotation
IL_3J77_211Isolated non-canonical cWW pair
IL_3J77_212Single bulged A
IL_3J77_213No text annotation
IL_3J77_214Single bulged U
IL_3J77_215No text annotation
IL_3J77_216Isolated non-canonical cWW pair
IL_3J77_217Tandem non-canonical cWW pairs
IL_3J77_218Tandem non-canonical cWW pairs
IL_3J77_219Single bulged U
IL_3J77_220Single bulged U
IL_3J77_221Isolated non-canonical cWW pair
IL_3J77_222No text annotation
IL_3J77_262No text annotation
IL_3J77_223Single bulged U
IL_3J77_224Double sheared; A in syn
IL_3J77_225Multiple bulged bases
IL_3J77_226Single bulged A
IL_3J77_227Minor groove platform related
IL_3J77_228Minor groove platform
IL_3J77_229Single stack bend
IL_3J77_230Symmetric double minor groove platform
IL_3J77_2318x7 Sarcin-Ricin; G-bulge
IL_3J77_232Isolated non-canonical cWW pair
IL_3J77_233No text annotation
IL_3J77_234Isolated non-canonical cWW pair
IL_3J77_235Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J4_3J77_0031/2S/112:113,
1/2S/267:272,
1/2S/293:299,
1/2S/316:319
No text annotation
homologous
J4_8P9A_012
J4_94698.1
J6_3J77_0031/2S/22:27,
1/2S/58:68,
1/2S/75:79,
1/2S/106:110,
1/2S/321:331,
1/8S/32:35
No text annotation

Problematic loops

#loop idProblemSequence
J3_3J77_001No text annotation
J3_3J77_030No text annotation
J3_3J77_002No text annotation
J3_3J77_031No text annotation
J3_3J77_032No text annotation
J3_3J77_003No text annotation
J3_3J77_004No text annotation
J3_3J77_005No text annotation
J3_3J77_006No text annotation
J3_3J77_033No text annotation
J3_3J77_007No text annotation
J3_3J77_008No text annotation
J3_3J77_009No text annotation
J3_3J77_010No text annotation
J3_3J77_011No text annotation
J3_3J77_034No text annotation
J3_3J77_035No text annotation
J3_3J77_012No text annotation
J3_3J77_013No text annotation
J3_3J77_036No text annotation
J3_3J77_037No text annotation
J3_3J77_014No text annotation
J3_3J77_015No text annotation
J3_3J77_016No text annotation
J3_3J77_017No text annotation
J3_3J77_018No text annotation
J3_3J77_019No text annotation
J3_3J77_020No text annotation
J3_3J77_021No text annotation
J3_3J77_022No text annotation
J3_3J77_045No text annotation
J3_3J77_038No text annotation
J3_3J77_023No text annotation
J3_3J77_039No text annotation
J3_3J77_040No text annotation
J3_3J77_024No text annotation
J3_3J77_025No text annotation
J3_3J77_041No text annotation
J3_3J77_026No text annotation
J3_3J77_027No text annotation
J3_3J77_042No text annotation
J3_3J77_028No text annotation
J3_3J77_043No text annotation
J3_3J77_029No text annotation
J3_3J77_044No text annotation
J4_3J77_001No text annotation
J4_3J77_002No text annotation
J4_3J77_004No text annotation
J4_3J77_005No text annotation
J4_3J77_006No text annotation
J4_3J77_007No text annotation
J4_3J77_014No text annotation
J4_3J77_008No text annotation
J4_3J77_009No text annotation
J4_3J77_010No text annotation
J4_3J77_011No text annotation
J4_3J77_012No text annotation
J4_3J77_013tRNA junction
J5_3J77_001No text annotation
J5_3J77_002No text annotation
J5_3J77_003No text annotation
J5_3J77_004No text annotation
J5_3J77_005No text annotation
J5_3J77_006No text annotation
J5_3J77_007No text annotation
J5_3J77_008No text annotation
J5_3J77_009No text annotation
J5_3J77_010No text annotation
J6_3J77_001No text annotation
J6_3J77_002No text annotation
J7_3J77_001No text annotation

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