HL_3J77_031

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

3J77|1|1S|U|1398, 3J77|1|1S|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_031 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2845

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J77|1|1S|U|1396
3J77|1|1S|U|1397
3J77|1|1S|U|1398
3J77|1|1S|C|1399
3J77|1|1S|A|1400
3J77|1|1S|A|1401
3J77|1|1S|G|1402

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain 28

40S ribosomal protein S28