HL_3J77_080

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGCCUUGGUCAGACGCAGCGGGCCUUGUUGUAGACGGCC

Length

39 nucleotides

Bulged bases

3J77|1|2S|U|1967, 3J77|1|2S|G|1968, 3J77|1|2S|C|1980

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|2S|G|1962
3J77|1|2S|G|1963
3J77|1|2S|C|1964
3J77|1|2S|C|1965
3J77|1|2S|U|1966
3J77|1|2S|U|1967
3J77|1|2S|G|1968
3J77|1|2S|G|1969
3J77|1|2S|U|1970
3J77|1|2S|C|1971
3J77|1|2S|A|1972
3J77|1|2S|G|1973
3J77|1|2S|A|1974
3J77|1|2S|C|1975
3J77|1|2S|G|1976
3J77|1|2S|C|1977
3J77|1|2S|A|1978
3J77|1|2S|G|1979
3J77|1|2S|C|1980
3J77|1|2S|G|1981
3J77|1|2S|G|1982
3J77|1|2S|G|2037
3J77|1|2S|C|2038
3J77|1|2S|C|2039
3J77|1|2S|U|2040
3J77|1|2S|U|2041
3J77|1|2S|G|2042
3J77|1|2S|U|2043
3J77|1|2S|U|2044
3J77|1|2S|G|2045
3J77|1|2S|U|2046
3J77|1|2S|A|2047
3J77|1|2S|G|2048
3J77|1|2S|A|2049
3J77|1|2S|C|2050
3J77|1|2S|G|2051
3J77|1|2S|G|2052
3J77|1|2S|C|2053
3J77|1|2S|C|2054

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 88

60S ribosomal protein L38